Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CS031_RS03685 Genome accession   NZ_CP024278
Coordinates   705546..706283 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ATCC 43896     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700546..711283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS031_RS03655 yfiL 700704..701069 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CS031_RS03660 aroF 701279..702349 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CS031_RS03665 tyrA 702360..703481 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CS031_RS03670 pheA 703524..704684 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CS031_RS27655 pheL 704783..704830 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CS031_RS03675 raiA 704934..705275 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CS031_RS03685 comL 705546..706283 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CS031_RS03690 rluD 706418..707398 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CS031_RS03695 yfiH 707395..708126 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CS031_RS03700 clpC 708256..710829 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212577 CS031_RS03685 WP_000197686.1 705546..706283(-) (comL) [Escherichia coli strain ATCC 43896]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212577 CS031_RS03685 WP_000197686.1 705546..706283(-) (comL) [Escherichia coli strain ATCC 43896]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTACGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment