Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   COG40_RS15000 Genome accession   NZ_CP024275
Coordinates   2885896..2886633 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O6:H16 strain M9682-C1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2880896..2891633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG40_RS14985 clpC 2881350..2883923 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  COG40_RS14990 yfiH 2884053..2884784 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  COG40_RS14995 rluD 2884781..2885761 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  COG40_RS15000 comL 2885896..2886633 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  COG40_RS15010 raiA 2886904..2887245 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  COG40_RS26050 pheL 2887349..2887396 (+) 48 WP_010723158.1 phe operon leader peptide -
  COG40_RS15015 pheA 2887495..2888655 (+) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  COG40_RS15020 tyrA 2888698..2889819 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  COG40_RS15025 aroF 2889830..2890900 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  COG40_RS15030 yfiL 2891110..2891487 (+) 378 WP_000976005.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212519 COG40_RS15000 WP_000197686.1 2885896..2886633(+) (comL) [Escherichia coli O6:H16 strain M9682-C1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212519 COG40_RS15000 WP_000197686.1 2885896..2886633(+) (comL) [Escherichia coli O6:H16 strain M9682-C1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376