Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A5T63_RS14285 Genome accession   NZ_CP024273
Coordinates   2776772..2777509 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain F9792     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2771772..2782509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A5T63_RS14270 clpC 2772226..2774799 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A5T63_RS14275 yfiH 2774929..2775660 (-) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  A5T63_RS14280 rluD 2775657..2776637 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A5T63_RS14285 comL 2776772..2777509 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A5T63_RS14295 raiA 2777786..2778127 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A5T63_RS26080 pheL 2778231..2778278 (+) 48 WP_010723158.1 phe operon leader peptide -
  A5T63_RS14300 pheA 2778377..2779537 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  A5T63_RS14305 tyrA 2779580..2780701 (-) 1122 WP_001613624.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A5T63_RS14310 aroF 2780712..2781782 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A5T63_RS14315 yfiL 2781992..2782357 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212435 A5T63_RS14285 WP_000197686.1 2776772..2777509(+) (comL) [Escherichia coli strain F9792]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212435 A5T63_RS14285 WP_000197686.1 2776772..2777509(+) (comL) [Escherichia coli strain F9792]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376