Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PA0409 Genome accession   NC_002516
Coordinates   450093..450458 (+) Length   121 a.a.
NCBI ID   NP_249100.1    Uniprot ID   P43501
Organism   Pseudomonas aeruginosa PAO1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445093..455458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA0403 pyrR 445715..446227 (-) 513 NP_249094.1 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase -
  PA0404 - 446339..446773 (-) 435 NP_249095.1 Holliday junction resolvase -
  PA0405 - 446773..447342 (-) 570 NP_249096.1 hypothetical protein -
  PA0406 tonB3 447391..448350 (-) 960 NP_249097.1 transporter TonB -
  PA0407 gshB 448431..449384 (-) 954 NP_249098.1 glutathione synthetase -
  PA0408 pilG 449639..450046 (+) 408 NP_249099.1 pilus biosynthesis/twitching motility protein PilG Regulator
  PA0409 pilH 450093..450458 (+) 366 NP_249100.1 twitching motility protein PilH Machinery gene
  PA0410 pilI 450509..451045 (+) 537 NP_249101.1 twitching motility protein PilI -
  PA0411 pilJ 451130..453178 (+) 2049 NP_249102.1 twitching motility protein PilJ -
  PA0412 pilK 453239..454114 (+) 876 NP_249103.1 methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=21242 PA0409 NP_249100.1 450093..450458(+) (pilH) [Pseudomonas aeruginosa PAO1]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=21242 PA0409 NP_249100.1 450093..450458(+) (pilH) [Pseudomonas aeruginosa PAO1]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P43501

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment