Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CCV27_RS07555 Genome accession   NZ_CP024269
Coordinates   1487922..1488659 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain F8111-1SC3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1482922..1493659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCV27_RS07540 clpC 1483376..1485949 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CCV27_RS07545 yfiH 1486079..1486810 (-) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  CCV27_RS07550 rluD 1486807..1487787 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CCV27_RS07555 comL 1487922..1488659 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CCV27_RS07565 raiA 1488936..1489277 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CCV27_RS26875 pheL 1489381..1489428 (+) 48 WP_010723158.1 phe operon leader peptide -
  CCV27_RS07570 pheA 1489527..1490687 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CCV27_RS07575 tyrA 1490730..1491851 (-) 1122 WP_001613624.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CCV27_RS07580 aroF 1491862..1492932 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CCV27_RS07585 yfiL 1493142..1493507 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212342 CCV27_RS07555 WP_000197686.1 1487922..1488659(+) (comL) [Escherichia coli strain F8111-1SC3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212342 CCV27_RS07555 WP_000197686.1 1487922..1488659(+) (comL) [Escherichia coli strain F8111-1SC3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376