Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A4V61_RS22185 Genome accession   NZ_CP024260
Coordinates   4208994..4209731 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain F5656C1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4203994..4214731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V61_RS22155 yfiL 4204140..4204517 (-) 378 WP_064764278.1 DUF2799 domain-containing protein -
  A4V61_RS22160 aroF 4204727..4205797 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A4V61_RS22165 tyrA 4205808..4206929 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A4V61_RS22170 pheA 4206972..4208132 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  A4V61_RS26175 pheL 4208231..4208278 (-) 48 WP_010723158.1 phe operon leader peptide -
  A4V61_RS22175 raiA 4208382..4208723 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A4V61_RS22185 comL 4208994..4209731 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A4V61_RS22190 rluD 4209866..4210846 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A4V61_RS22195 yfiH 4210843..4211574 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  A4V61_RS22200 clpC 4211704..4214277 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212236 A4V61_RS22185 WP_000197686.1 4208994..4209731(-) (comL) [Escherichia coli strain F5656C1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212236 A4V61_RS22185 WP_000197686.1 4208994..4209731(-) (comL) [Escherichia coli strain F5656C1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376