Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   COG37_RS27560 Genome accession   NZ_CP024257
Coordinates   3348136..3348966 (-) Length   276 a.a.
NCBI ID   WP_249822020.1    Uniprot ID   -
Organism   Escherichia coli O25:H16 strain F5505-C1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3343136..3353966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG37_RS17515 ycaR 3343865..3344047 (-) 183 WP_000350058.1 protein YcaR -
  COG37_RS17520 ycaQ 3344099..3345331 (-) 1233 WP_000056538.1 crosslink repair DNA glycosylase YcaQ -
  COG37_RS17525 lpxK 3345368..3346354 (-) 987 WP_000570539.1 tetraacyldisaccharide 4'-kinase -
  COG37_RS17530 msbA 3346351..3348099 (-) 1749 WP_000551270.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  COG37_RS27560 rec2 3348136..3348966 (-) 831 WP_249822020.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  COG37_RS17535 - 3348861..3350399 (-) 1539 WP_001735070.1 DNA internalization-related competence protein ComEC/Rec2 -
  COG37_RS17540 ihfB 3350607..3350891 (-) 285 WP_000167336.1 integration host factor subunit beta -
  COG37_RS17545 rpsA 3351051..3352724 (-) 1674 WP_000140327.1 30S ribosomal protein S1 -
  COG37_RS17550 cmk 3352835..3353518 (-) 684 WP_000123998.1 (d)CMP kinase -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 31810.02 Da        Isoelectric Point: 7.6200

>NTDB_id=212159 COG37_RS27560 WP_249822020.1 3348136..3348966(-) (rec2) [Escherichia coli O25:H16 strain F5505-C1]
MCGWRLADCWPLWQKPRPDEWQLYMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHE
HLDHRGGLDSILHIWPMLWIRSPLNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTGDI
EAPAEQKMLSRYWQQVQATLLQVPHHGSNTSSSLPLIQRVNGKVALASASRYNAWRLPSNKVKHRYQLQGYQWIDTPHQG
QTTVNFSAQGWRISSLREQILPRWYHQWFGVPVDNG

Nucleotide


Download         Length: 831 bp        

>NTDB_id=212159 COG37_RS27560 WP_249822020.1 3348136..3348966(-) (rec2) [Escherichia coli O25:H16 strain F5505-C1]
GTGTGTGGCTGGAGGCTTGCTGATTGCTGGCCGCTGTGGCAAAAACCTCGACCTGACGAGTGGCAGCTGTACATGCTTGA
TGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAG
GGGATAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAA
CATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGCCGATGTTATGGATCAGAAGTCCGTTAAACTGGGA
ACATCATCAGCCCTGTGTGCGTGGCGAAGCGTGGCAATGGCAAGGATTGCGTTTCAGCGCGCACTGGCCTTTACAAGGTA
GCAACGATAAAGGAAATAACCATTCCTGTGTGGTTAAGGTTGATGACGGGACGAATAGCATTCTTCTAACCGGTGATATT
GAAGCCCCAGCTGAACAAAAGATGCTAAGCCGTTACTGGCAGCAAGTGCAGGCAACATTGCTTCAGGTACCTCACCATGG
CAGTAATACCTCATCATCGTTGCCATTAATTCAGCGAGTGAATGGAAAAGTGGCACTCGCATCGGCATCGCGCTATAACG
CATGGCGACTGCCCTCTAACAAAGTTAAGCATCGCTATCAACTGCAAGGATATCAATGGATTGATACTCCACATCAAGGT
CAAACAACGGTCAATTTTTCAGCGCAAGGCTGGCGGATTAGCAGCCTCAGGGAGCAAATTTTACCTCGTTGGTATCATCA
GTGGTTTGGCGTGCCAGTGGATAACGGGTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(27-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

38.636

95.652

0.37
  comEC Vibrio cholerae strain A1552

43.668

82.971

0.362

Multiple sequence alignment