Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   COG37_RS07565 Genome accession   NZ_CP024257
Coordinates   1466528..1467265 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O25:H16 strain F5505-C1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1461528..1472265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG37_RS07535 yfiL 1461686..1462051 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  COG37_RS07540 aroF 1462261..1463331 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  COG37_RS07545 tyrA 1463342..1464463 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  COG37_RS07550 pheA 1464506..1465666 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  COG37_RS26810 pheL 1465765..1465812 (-) 48 WP_010723158.1 phe operon leader peptide -
  COG37_RS07555 raiA 1465916..1466257 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  COG37_RS07565 comL 1466528..1467265 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  COG37_RS07570 rluD 1467400..1468380 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  COG37_RS07575 yfiH 1468377..1469108 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  COG37_RS07580 clpC 1469238..1471811 (+) 2574 WP_073535156.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=212115 COG37_RS07565 WP_000197686.1 1466528..1467265(-) (comL) [Escherichia coli O25:H16 strain F5505-C1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=212115 COG37_RS07565 WP_000197686.1 1466528..1467265(-) (comL) [Escherichia coli O25:H16 strain F5505-C1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376