Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VC_RS08905 Genome accession   NC_002505
Coordinates   1985956..1986570 (-) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae O1 biovar El Tor str. N16961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1980956..1991570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC_RS08880 (VC1841) ybgE 1981267..1981584 (-) 318 WP_001286617.1 cyd operon protein YbgE -
  VC_RS08885 (VC1842) cydX 1981577..1981684 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  VC_RS08890 (VC1843) cydB 1981697..1982833 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  VC_RS08895 (VC1844) cydA 1982851..1984437 (-) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  VC_RS08900 (VC1845) ruvB 1984896..1985900 (-) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  VC_RS08905 (VC1846) ruvA 1985956..1986570 (-) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  VC_RS08910 (VC1847) ruvC 1986667..1987188 (-) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  VC_RS08915 (VC1848) cysS 1987276..1988655 (-) 1380 WP_000913180.1 cysteine--tRNA ligase -
  VC_RS08920 (VC1849) - 1988801..1989295 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  VC_RS08925 (VC1850) lpxH 1989336..1990075 (+) 740 Protein_1714 UDP-2,3-diacylglucosamine diphosphatase -
  VC_RS08930 (VC1851) - 1990171..1991385 (+) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=21202 VC_RS08905 WP_000580359.1 1985956..1986570(-) (ruvA) [Vibrio cholerae O1 biovar El Tor str. N16961]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=21202 VC_RS08905 WP_000580359.1 1985956..1986570(-) (ruvA) [Vibrio cholerae O1 biovar El Tor str. N16961]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363

Multiple sequence alignment