Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   COG34_RS17435 Genome accession   NZ_CP024243
Coordinates   3358935..3359672 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O128:H27 strain 90-9281     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3353935..3364672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COG34_RS17405 yfiL 3354093..3354458 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  COG34_RS17410 aroF 3354668..3355738 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  COG34_RS17415 tyrA 3355749..3356870 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  COG34_RS17420 pheA 3356913..3358073 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  COG34_RS27015 pheL 3358172..3358219 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  COG34_RS17425 raiA 3358323..3358664 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  COG34_RS17435 comL 3358935..3359672 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  COG34_RS17440 rluD 3359807..3360787 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  COG34_RS17445 yfiH 3360784..3361515 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  COG34_RS17450 clpC 3361645..3364218 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=211892 COG34_RS17435 WP_000197686.1 3358935..3359672(-) (comL) [Escherichia coli O128:H27 strain 90-9281]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=211892 COG34_RS17435 WP_000197686.1 3358935..3359672(-) (comL) [Escherichia coli O128:H27 strain 90-9281]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376