Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | BVD86_RS05905 | Genome accession | NZ_CP018909 |
| Coordinates | 1236997..1237377 (-) | Length | 126 a.a. |
| NCBI ID | WP_002121425.1 | Uniprot ID | A0A009HD22 |
| Organism | Acinetobacter pittii strain XJ88 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1231997..1242377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BVD86_RS05875 (BVD86_05890) | tadA | 1232000..1232503 (-) | 504 | WP_002121378.1 | tRNA adenosine(34) deaminase TadA | - |
| BVD86_RS05880 (BVD86_05895) | hibch | 1232509..1233633 (-) | 1125 | WP_014206599.1 | enoyl-CoA hydratase/isomerase family protein | - |
| BVD86_RS05885 (BVD86_05900) | ung | 1233630..1234343 (-) | 714 | WP_101663545.1 | uracil-DNA glycosylase | - |
| BVD86_RS05890 (BVD86_05905) | - | 1234397..1234993 (-) | 597 | WP_017386831.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| BVD86_RS05895 (BVD86_05910) | gspK | 1235222..1236181 (-) | 960 | WP_039761082.1 | type II secretion system minor pseudopilin GspK | - |
| BVD86_RS05900 (BVD86_05915) | xcpW | 1236182..1236997 (-) | 816 | WP_101663546.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| BVD86_RS05905 (BVD86_05920) | xcpV | 1236997..1237377 (-) | 381 | WP_002121425.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| BVD86_RS05910 (BVD86_05925) | - | 1237367..1237921 (-) | 555 | WP_002121405.1 | type II secretion system protein | - |
| BVD86_RS05915 (BVD86_05930) | - | 1237928..1238536 (-) | 609 | WP_005069536.1 | TetR/AcrR family transcriptional regulator | - |
| BVD86_RS05920 (BVD86_05935) | ycfH | 1238573..1239346 (-) | 774 | WP_101663547.1 | TatD family hydrolase | - |
| BVD86_RS05925 (BVD86_05940) | pilZ | 1239364..1239705 (-) | 342 | WP_002121335.1 | PilZ domain-containing protein | - |
| BVD86_RS05930 (BVD86_05945) | holB | 1239716..1240696 (-) | 981 | WP_032007245.1 | DNA polymerase III subunit delta' | - |
| BVD86_RS05935 (BVD86_05950) | kdsB | 1240710..1241471 (-) | 762 | WP_002121419.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.17 Da Isoelectric Point: 9.4463
>NTDB_id=211743 BVD86_RS05905 WP_002121425.1 1236997..1237377(-) (xcpV) [Acinetobacter pittii strain XJ88]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIALMEINQEWLEGTQSKQVTSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=211743 BVD86_RS05905 WP_002121425.1 1236997..1237377(-) (xcpV) [Acinetobacter pittii strain XJ88]
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTGCAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTAGCAATGAATGAAATTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAGTTACTTCTCAAGGCGAAACATGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTTGATTTGCAAATTAGCTTATATGATTCTGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTGTTTTTTAATTATCCAATGAAAGCAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
93.651 |
100 |
0.937 |