Detailed information NTG0211742

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: BVD86_RS05900
• Genome accession: NZ_CP018909
• Coordinates: 1236182..1236997 (-)
• Length: 271 a.a.
• NCBI ID: WP_101663546.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain XJ88
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1231182..1241997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVD86_RS05870 (BVD86_05885)	-	1231489..1231929 (-)	441	WP_014206600.1	SRPBCC family protein	-
BVD86_RS05875 (BVD86_05890)	tadA	1232000..1232503 (-)	504	WP_002121378.1	tRNA adenosine(34) deaminase TadA	-
BVD86_RS05880 (BVD86_05895)	hibch	1232509..1233633 (-)	1125	WP_014206599.1	enoyl-CoA hydratase/isomerase family protein	-
BVD86_RS05885 (BVD86_05900)	ung	1233630..1234343 (-)	714	WP_101663545.1	uracil-DNA glycosylase	-
BVD86_RS05890 (BVD86_05905)	-	1234397..1234993 (-)	597	WP_017386831.1	6-pyruvoyl trahydropterin synthase family protein	-
BVD86_RS05895 (BVD86_05910)	gspK	1235222..1236181 (-)	960	WP_039761082.1	type II secretion system minor pseudopilin GspK	-
BVD86_RS05900 (BVD86_05915)	xcpW	1236182..1236997 (-)	816	WP_101663546.1	type II secretion system minor pseudopilin GspJ	Machinery gene
BVD86_RS05905 (BVD86_05920)	xcpV	1236997..1237377 (-)	381	WP_002121425.1	type II secretion system minor pseudopilin GspI	Machinery gene
BVD86_RS05910 (BVD86_05925)	-	1237367..1237921 (-)	555	WP_002121405.1	type II secretion system protein	-
BVD86_RS05915 (BVD86_05930)	-	1237928..1238536 (-)	609	WP_005069536.1	TetR/AcrR family transcriptional regulator	-
BVD86_RS05920 (BVD86_05935)	ycfH	1238573..1239346 (-)	774	WP_101663547.1	TatD family hydrolase	-
BVD86_RS05925 (BVD86_05940)	pilZ	1239364..1239705 (-)	342	WP_002121335.1	PilZ domain-containing protein	-
BVD86_RS05930 (BVD86_05945)	holB	1239716..1240696 (-)	981	WP_032007245.1	DNA polymerase III subunit delta'	-
BVD86_RS05935 (BVD86_05950)	kdsB	1240710..1241471 (-)	762	WP_002121419.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 271 a.a.
• Molecular weight: 30964.43 Da
• Isoelectric Point: 10.0236

>NTDB_id=211742 BVD86_RS05900 WP_101663546.1 1236182..1236997(-) (xcpW) [Acinetobacter pittii strain XJ88]
MIKNKCFRYPSTASRLAARSEQMMRGYSEQSSSSCAQTKLRFKDSHTRNIVSHLATRSSSARLTRASGFTLVELLVSIAI
FAILSLLGWKVFDYLLKVRDRNTQHEVQLFELQDAYQQVLRDTLQIIPLSANQGGQLRPALEIDNQVLRFSKAGVTDPLK
QGLSPFERIEYRYDPDQKKLYRLKYSNLNTSNREQPLSSTLLSQVEQFQIMVLTPQEVTKWPEVNIDPTKPDEFRKLPKG
IKIQLTVAGVSYEWIYSLNQGDLSLSKQGGQ

Nucleotide

• Length: 816 bp

>NTDB_id=211742 BVD86_RS05900 WP_101663546.1 1236182..1236997(-) (xcpW) [Acinetobacter pittii strain XJ88]
ATGATAAAGAATAAATGTTTTCGCTATCCAAGCACCGCTTCACGTCTTGCGGCACGATCGGAGCAGATGATGAGGGGTTA
CTCCGAGCAAAGCTCTTCGTCTTGCGCTCAGACAAAGCTTCGCTTTAAAGACTCTCACACTCGAAACATAGTTTCTCATC
TTGCGACACGATCGAGCAGTGCTCGATTAACTCGTGCCTCAGGATTTACTTTAGTTGAGCTTTTAGTTTCAATTGCAATT
TTTGCTATTTTATCTTTGTTGGGTTGGAAGGTTTTTGACTATTTATTAAAAGTTCGCGATCGTAATACTCAACATGAAGT
GCAGCTATTTGAATTACAAGATGCTTATCAACAAGTTTTGCGTGATACATTGCAAATTATACCTTTATCAGCCAATCAAG
GCGGGCAATTACGTCCAGCTTTAGAGATTGATAATCAAGTTCTCCGCTTTAGTAAGGCGGGTGTTACTGATCCATTAAAG
CAAGGATTATCACCTTTTGAGCGTATCGAATATCGATATGATCCTGATCAAAAAAAGCTTTATCGCCTTAAATATAGTAA
CTTAAATACTTCAAATAGAGAGCAACCCTTATCAAGTACGCTGTTGAGCCAAGTTGAACAATTTCAAATTATGGTTTTGA
CACCTCAAGAAGTAACAAAGTGGCCTGAAGTTAATATTGACCCTACAAAACCTGATGAATTTAGGAAGTTGCCAAAAGGA
ATAAAAATACAACTCACGGTTGCAGGTGTAAGTTATGAGTGGATTTATAGCTTAAACCAAGGTGACTTATCGCTCTCCAA
ACAGGGAGGTCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (121-250)

• Prokaryotic N-terminal methylation motif (N_methyl) (65-87)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	88.889	83.026	0.738