Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NGO_RS10325 Genome accession   NC_002946
Coordinates   2015482..2015907 (-) Length   141 a.a.
NCBI ID   WP_039080665.1    Uniprot ID   A0A0H4IWJ0
Organism   Neisseria gonorrhoeae FA 1090     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010482..2020907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS10305 (NGO2041) thiC 2011464..2013365 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  NGO_RS10310 - 2013854..2014204 (-) 351 Protein_2023 pilin -
  NGO_RS11960 - 2014244..2014599 (-) 356 Protein_2024 pilin -
  NGO_RS10320 (NGO_10980) - 2014626..2015018 (-) 393 Protein_2025 pilin -
  NGO_RS10325 (NGO2041a) pilE 2015482..2015907 (-) 426 WP_039080665.1 pilin Machinery gene
  NGO_RS11965 (NGO_10990) - 2016308..2016672 (-) 365 Protein_2027 pilin -
  NGO_RS11970 - 2016712..2017053 (-) 342 Protein_2028 pilin -
  NGO_RS10335 (NGO2043) - 2017057..2017365 (+) 309 Protein_2029 NAD(P)-dependent oxidoreductase -
  NGO_RS10340 (NGO2044) metG 2017440..2019494 (-) 2055 WP_010951390.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14982.79 Da        Isoelectric Point: 9.7029

>NTDB_id=21174 NGO_RS10325 WP_039080665.1 2015482..2015907(-) (pilE) [Neisseria gonorrhoeae FA 1090]
MPTDPDSRLRGNDEAILLAEGQKSAVTGYYLNNGKWPADNGAAGVASPATDIKGKYVKEVKVENGVVTAQMASTGVNNEI
KGKKLSLWAKRQDGSVKWFCGQPVKRDAGAKTGADDVKADGNNGINTKHLPSTCRDKHDAK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=21174 NGO_RS10325 WP_039080665.1 2015482..2015907(-) (pilE) [Neisseria gonorrhoeae FA 1090]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGGGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAACCGGCGTAAACAATGAAATC
AAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGA
CGCCGGCGCCAAAACCGGCGCCGACGACGTCAAAGCCGACGGCAACAACGGCATCAACACCAAGCACCTGCCGTCAACCT
GCCGCGATAAACATGATGCCAAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4IWJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

68.276

100

0.702
  pilE Neisseria gonorrhoeae strain FA1090

69.014

100

0.695

Multiple sequence alignment