Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CNZ63_RS17395 Genome accession   NZ_CP024232
Coordinates   3333090..3333827 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O6:H16 strain 2014EL-1346-6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3328090..3338827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNZ63_RS17345 - 3328614..3328838 (+) 225 WP_050487209.1 ogr/Delta-like zinc finger family protein -
  CNZ63_RS17355 - 3329030..3329170 (+) 141 WP_032140709.1 Hok/Gef family protein -
  CNZ63_RS29030 - 3329420..3329530 (+) 111 Protein_3171 Com family DNA-binding transcriptional regulator -
  CNZ63_RS17365 istA 3329616..3330638 (+) 1023 WP_001295213.1 IS21-like element IS100 family transposase -
  CNZ63_RS17370 istB 3330635..3331417 (+) 783 WP_001317493.1 IS21-like element IS100kyp family helper ATPase IstB -
  CNZ63_RS17380 - 3331521..3332327 (+) 807 WP_000215751.1 site-specific DNA-methyltransferase -
  CNZ63_RS17385 raiA 3332478..3332819 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CNZ63_RS17395 comL 3333090..3333827 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CNZ63_RS17400 rluD 3333962..3334942 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CNZ63_RS17405 yfiH 3334939..3335670 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CNZ63_RS17410 clpC 3335800..3338373 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=211731 CNZ63_RS17395 WP_000197686.1 3333090..3333827(-) (comL) [Escherichia coli O6:H16 strain 2014EL-1346-6]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=211731 CNZ63_RS17395 WP_000197686.1 3333090..3333827(-) (comL) [Escherichia coli O6:H16 strain 2014EL-1346-6]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment