Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   BVD88_RS12610 Genome accession   NZ_CP018907
Coordinates   2130855..2131319 (-) Length   154 a.a.
NCBI ID   WP_162818817.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21273     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2125855..2136319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD88_RS12595 (BVD88_13160) rfbC 2126650..2127207 (+) 558 WP_185079974.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  BVD88_RS12600 (BVD88_13165) - 2127251..2129269 (-) 2019 WP_002224367.1 OPT family oligopeptide transporter -
  BVD88_RS12605 (BVD88_13170) dnaJ 2129465..2130586 (-) 1122 WP_002215274.1 molecular chaperone DnaJ -
  BVD88_RS13825 - 2130668..2130826 (-) 159 WP_002215272.1 hypothetical protein -
  BVD88_RS12610 (BVD88_13175) comE 2130855..2131319 (-) 465 WP_162818817.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16591.81 Da        Isoelectric Point: 10.8773

>NTDB_id=211684 BVD88_RS12610 WP_162818817.1 2130855..2131319(-) (comE) [Neisseria meningitidis strain M21273]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=211684 BVD88_RS12610 WP_162818817.1 2130855..2131319(-) (comE) [Neisseria meningitidis strain M21273]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment