Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   NGO_RS08545 Genome accession   NC_002946
Coordinates   1677383..1678087 (-) Length   234 a.a.
NCBI ID   WP_010951331.1    Uniprot ID   Q5F649
Organism   Neisseria gonorrhoeae FA 1090     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1672383..1683087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS08530 (NGO1714) - 1672744..1673745 (-) 1002 WP_010951330.1 peptidylprolyl isomerase -
  NGO_RS08535 (NGO1715) - 1673847..1676252 (-) 2406 WP_003698952.1 LPS-assembly protein LptD -
  NGO_RS08540 (NGO1716) amgK 1676322..1677326 (+) 1005 WP_003689901.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NGO_RS08545 (NGO1717) dsbA1 1677383..1678087 (-) 705 WP_010951331.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NGO_RS08550 (NGO1718) murJ 1678525..1680063 (+) 1539 WP_003689904.1 murein biosynthesis integral membrane protein MurJ -
  NGO_RS08555 (NGO1719) - 1680196..1681155 (+) 960 WP_003705245.1 YheT family hydrolase -
  NGO_RS08560 (NGO1721) trpC 1681206..1681988 (+) 783 WP_003694229.1 indole-3-glycerol phosphate synthase TrpC -

Sequence


Protein


Download         Length: 234 a.a.        Molecular weight: 25420.13 Da        Isoelectric Point: 5.6758

>NTDB_id=21168 NGO_RS08545 WP_010951331.1 1677383..1678087(-) (dsbA1) [Neisseria gonorrhoeae FA 1090]
MKSRHLALALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHC
ARLEPVLSKHAKSFKDDMYLRTEHVVWQKEMLPLARLAAAVDMAAAESKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQ
TAFDGKKVLAAYESPESQARAGKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=21168 NGO_RS08545 WP_010951331.1 1677383..1678087(-) (dsbA1) [Neisseria gonorrhoeae FA 1090]
ATGAAATCCAGACACCTCGCCCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAAC
CAGCGTCCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGACTGGTCGAAGGGCAAAACTACACCG
TCCTTGCCAACCCGATTCCCCAACAGCAGGCAGGCAAGGTTGAAGTGCTTGAGTTTTTCGGCTATTTTTGTCCGCACTGC
GCCCGCCTCGAACCTGTTTTGAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTG
GCAGAAAGAAATGCTGCCGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGAAAGCAAAGATGTGGCGAACA
GCCATATTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAA
ACCGCCTTTGACGGCAAAAAAGTCCTTGCCGCCTACGAATCCCCCGAAAGTCAGGCGCGCGCCGGCAAAATGCAGGAGCT
GACCGAAACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGT
CCGGTATGAACACCATCGACCTTTTGGCGGACAAAGTACGTGAAGAACAAAAAGCCGCGCAGTAG

Domains


Predicted by InterproScan.

(65-214)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5F649

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

97.009

100

0.97

  dsbA2 Neisseria meningitidis MC58

76.19

80.769

0.615


Multiple sequence alignment