Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A3411_RS20450 Genome accession   NZ_CP024228
Coordinates   3896868..3897344 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli O25:NM strain 2014EL-1343-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3891868..3902344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3411_RS20415 kpsS 3893375..3894595 (+) 1221 WP_001735713.1 capsule biosynthesis protein Regulator
  A3411_RS20420 - 3894621..3894851 (-) 231 Protein_3756 hypothetical protein -
  A3411_RS20425 - 3894957..3895133 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  A3411_RS20430 - 3895150..3895586 (-) 437 Protein_3758 DUF5983 family protein -
  A3411_RS20435 - 3895583..3895957 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  A3411_RS20440 - 3896047..3896415 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A3411_RS20445 - 3896578..3896799 (-) 222 WP_001735710.1 DUF987 domain-containing protein -
  A3411_RS20450 radC 3896868..3897344 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  A3411_RS20455 - 3897360..3897845 (-) 486 WP_001735709.1 antirestriction protein -
  A3411_RS20460 - 3897900..3898718 (-) 819 WP_074481115.1 DUF932 domain-containing protein -
  A3411_RS20470 - 3898836..3899031 (-) 196 Protein_3765 DUF905 family protein -
  A3411_RS20475 - 3899102..3901948 (-) 2847 WP_074483040.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=211653 A3411_RS20450 WP_001186725.1 3896868..3897344(-) (radC) [Escherichia coli O25:NM strain 2014EL-1343-2]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=211653 A3411_RS20450 WP_001186725.1 3896868..3897344(-) (radC) [Escherichia coli O25:NM strain 2014EL-1343-2]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment