Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   A3411_RS20415 Genome accession   NZ_CP024228
Coordinates   3893375..3894595 (+) Length   406 a.a.
NCBI ID   WP_001735713.1    Uniprot ID   -
Organism   Escherichia coli O25:NM strain 2014EL-1343-2     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3888375..3899595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3411_RS20400 rfbA 3888519..3889397 (+) 879 WP_000166786.1 glucose-1-phosphate thymidylyltransferase RfbA -
  A3411_RS20405 rfbC 3889463..3890014 (+) 552 WP_001100778.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  A3411_RS20410 - 3890064..3892211 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  A3411_RS20415 kpsS 3893375..3894595 (+) 1221 WP_001735713.1 capsule biosynthesis protein Regulator
  A3411_RS20420 - 3894621..3894851 (-) 231 Protein_3756 hypothetical protein -
  A3411_RS20425 - 3894957..3895133 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  A3411_RS20430 - 3895150..3895586 (-) 437 Protein_3758 DUF5983 family protein -
  A3411_RS20435 - 3895583..3895957 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  A3411_RS20440 - 3896047..3896415 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  A3411_RS20445 - 3896578..3896799 (-) 222 WP_001735710.1 DUF987 domain-containing protein -
  A3411_RS20450 radC 3896868..3897344 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  A3411_RS20455 - 3897360..3897845 (-) 486 WP_001735709.1 antirestriction protein -
  A3411_RS20460 - 3897900..3898718 (-) 819 WP_074481115.1 DUF932 domain-containing protein -
  A3411_RS20470 - 3898836..3899031 (-) 196 Protein_3765 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48421.92 Da        Isoelectric Point: 10.1710

>NTDB_id=211652 A3411_RS20415 WP_001735713.1 3893375..3894595(+) (kpsS) [Escherichia coli O25:NM strain 2014EL-1343-2]
MKNNALSILLSGKKYLLLQGPMGPFFNDIAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSAM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=211652 A3411_RS20415 WP_001735713.1 3893375..3894595(+) (kpsS) [Escherichia coli O25:NM strain 2014EL-1343-2]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTCTTCAA
TGATATTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGGCGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ACGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382

Multiple sequence alignment