Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   BVD88_RS01600 Genome accession   NZ_CP018907
Coordinates   267259..267723 (+) Length   154 a.a.
NCBI ID   WP_162818804.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21273     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 262259..272723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVD88_RS01600 (BVD88_01700) comE 267259..267723 (+) 465 WP_162818804.1 ComEA family DNA-binding protein Machinery gene
  BVD88_RS13585 (BVD88_01710) - 268398..268502 (+) 105 Protein_262 IS1595 family transposase -
  BVD88_RS01620 (BVD88_01715) - 268551..268808 (-) 258 WP_002247771.1 hypothetical protein -
  BVD88_RS13130 - 269082..269309 (+) 228 WP_153310284.1 hypothetical protein -
  BVD88_RS01630 (BVD88_01725) aroG 269471..270526 (+) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  BVD88_RS01635 (BVD88_01730) - 270594..271082 (+) 489 WP_002216373.1 dihydrofolate reductase -
  BVD88_RS01640 (BVD88_01735) - 271432..271908 (-) 477 WP_002241062.1 CYTH domain-containing protein -
  BVD88_RS01645 (BVD88_01740) - 271920..272348 (-) 429 WP_002261574.1 CopD family protein -
  BVD88_RS01655 (BVD88_01750) - 272460..272705 (+) 246 WP_002226972.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16533.78 Da        Isoelectric Point: 10.9695

>NTDB_id=211649 BVD88_RS01600 WP_162818804.1 267259..267723(+) (comE) [Neisseria meningitidis strain M21273]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=211649 BVD88_RS01600 WP_162818804.1 267259..267723(+) (comE) [Neisseria meningitidis strain M21273]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment