Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NGO_RS06440 Genome accession   NC_002946
Coordinates   1257496..1257885 (-) Length   129 a.a.
NCBI ID   WP_225577445.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae FA 1090     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1255895..1256548 1257496..1257885 flank 948


Gene organization within MGE regions


Location: 1255895..1257885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS06425 (NGO1302) - 1255895..1256548 (+) 654 WP_010951236.1 IS1595 family transposase -
  NGO_RS06430 (NGO_06860) - 1256822..1257145 (+) 324 Protein_1276 hypothetical protein -
  NGO_RS12235 - 1257415..1257562 (+) 148 Protein_1277 peptidase -
  NGO_RS06440 (NGO1304) comE 1257496..1257885 (-) 390 WP_225577445.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 13597.35 Da        Isoelectric Point: 10.8280

>NTDB_id=21160 NGO_RS06440 WP_225577445.1 1257496..1257885(-) (comE) [Neisseria gonorrhoeae FA 1090]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAIAEYRA
QNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=21160 NGO_RS06440 WP_225577445.1 1257496..1257885(-) (comE) [Neisseria gonorrhoeae FA 1090]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCCATTGCGGAATACCGCGCG
CAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCTGAAAGA
CCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1
  comE Neisseria gonorrhoeae MS11

98.473

100

1

Multiple sequence alignment