Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   VC_RS01065 Genome accession   NC_002505
Coordinates   225260..225934 (+) Length   224 a.a.
NCBI ID   WP_000053959.1    Uniprot ID   Q9KVC9
Organism   Vibrio cholerae O1 biovar El Tor str. N16961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 220260..230934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC_RS01040 (VC0213) - 220385..221332 (-) 948 WP_000076197.1 Kdo(2)-lipid IV(A) acyltransferase -
  VC_RS01045 (VC0214) slmA 221338..221928 (-) 591 WP_000918350.1 nucleoid occlusion factor SlmA -
  VC_RS01050 - 221884..222021 (+) 138 WP_001889830.1 hypothetical protein -
  VC_RS01055 (VC0215) coaBC 222087..223286 (-) 1200 WP_001190972.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  VC_RS01060 (VC0216) - 223469..225148 (+) 1680 WP_000953041.1 methyl-accepting chemotaxis protein -
  VC_RS01065 (VC0217) radC 225260..225934 (+) 675 WP_000053959.1 RadC family protein Machinery gene
  VC_RS01070 (VC0218) rpmB 226229..226465 (+) 237 WP_000091952.1 50S ribosomal protein L28 -
  VC_RS01075 (VC0219) rpmG 226479..226646 (+) 168 WP_001051801.1 50S ribosomal protein L33 -
  VC_RS01080 (VC0220) - 226873..227355 (+) 483 WP_001266257.1 hypothetical protein -
  VC_RS01085 (VC0221) mutM 227365..228174 (+) 810 WP_001114647.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  VC_RS01090 (VC0222) coaD 228271..228765 (-) 495 WP_000078888.1 pantetheine-phosphate adenylyltransferase -
  VC_RS01095 (VC0223) - 228876..229913 (+) 1038 WP_000735619.1 glycosyltransferase family 9 protein -
  VC_RS01100 (VC0224) - 229975..230754 (-) 780 WP_000042983.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25246.07 Da        Isoelectric Point: 7.9636

>NTDB_id=21160 VC_RS01065 WP_000053959.1 225260..225934(+) (radC) [Vibrio cholerae O1 biovar El Tor str. N16961]
MSLKQLPTESMPREKLLQRGPQSLSDAELLAIFLRTGTQGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=21160 VC_RS01065 WP_000053959.1 225260..225934(+) (radC) [Vibrio cholerae O1 biovar El Tor str. N16961]
ATGAGCCTAAAACAGTTACCCACCGAATCCATGCCGCGCGAAAAATTGCTGCAACGCGGTCCACAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACCCAAGGCATGAACGTGCTCGCCTTAGCTGATCTGCTGCTGCGCGATT
TTGGATCGCTGCGCGCACTGTTTTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTT
CAATTACAAGCGGTATTGGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTGCTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-79)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KVC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.704

96.429

0.518
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379

Multiple sequence alignment