Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CJV63_RS05160 Genome accession   NZ_CP024223
Coordinates   1030973..1031710 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O169:H41 strain 2014EL-1345-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025973..1036710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJV63_RS05145 clpC 1026427..1029000 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CJV63_RS05150 yfiH 1029130..1029861 (-) 732 WP_000040122.1 purine nucleoside phosphorylase YfiH -
  CJV63_RS05155 rluD 1029858..1030838 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CJV63_RS05160 comL 1030973..1031710 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CJV63_RS05170 raiA 1031987..1032328 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CJV63_RS27055 pheL 1032432..1032479 (+) 48 WP_010723158.1 phe operon leader peptide -
  CJV63_RS05175 pheA 1032578..1033738 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CJV63_RS05180 tyrA 1033781..1034902 (-) 1122 WP_001613624.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CJV63_RS05185 aroF 1034913..1035983 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CJV63_RS05190 yfiL 1036193..1036558 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=211521 CJV63_RS05160 WP_000197686.1 1030973..1031710(+) (comL) [Escherichia coli O169:H41 strain 2014EL-1345-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=211521 CJV63_RS05160 WP_000197686.1 1030973..1031710(+) (comL) [Escherichia coli O169:H41 strain 2014EL-1345-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment