Detailed information NTG0211498

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: MOTT16_RS08560
• Genome accession: NZ_CP024185
• Coordinates: 1954572..1955249 (+)
• Length: 225 a.a.
• NCBI ID: WP_099834374.1
• Uniprot ID: -
• Organism: Moraxella osloensis strain TT16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1949572..1960249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MOTT16_RS08530 (MOTT16_08535)	murA	1949598..1950863 (-)	1266	WP_099834370.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
MOTT16_RS08535 (MOTT16_08540)	-	1950884..1951141 (-)	258	WP_007115578.1	BolA/IbaG family iron-sulfur metabolism protein	-
MOTT16_RS08540 (MOTT16_08545)	-	1951234..1951638 (-)	405	WP_099834371.1	YraN family protein	-
MOTT16_RS08545 (MOTT16_08550)	-	1951696..1952106 (+)	411	WP_076776769.1	hypothetical protein	-
MOTT16_RS08550 (MOTT16_08555)	rsmI	1952131..1952979 (+)	849	WP_099834372.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-
MOTT16_RS08555 (MOTT16_08560)	coaBC	1953162..1954484 (-)	1323	WP_099834373.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
MOTT16_RS08560 (MOTT16_08565)	radC	1954572..1955249 (+)	678	WP_099834374.1	RadC family protein	Machinery gene
MOTT16_RS08565 (MOTT16_08570)	-	1955246..1955815 (-)	570	WP_099834375.1	DUF4126 domain-containing protein	-
MOTT16_RS08570 (MOTT16_08575)	-	1955869..1956621 (-)	753	WP_050324675.1	TSUP family transporter	-
MOTT16_RS08575 (MOTT16_08580)	rplQ	1956711..1957070 (-)	360	WP_036593417.1	50S ribosomal protein L17	-
MOTT16_RS08580 (MOTT16_08585)	-	1957091..1958098 (-)	1008	WP_065253362.1	DNA-directed RNA polymerase subunit alpha	-
MOTT16_RS08585 (MOTT16_08590)	rpsD	1958128..1958769 (-)	642	WP_007115568.1	30S ribosomal protein S4	-
MOTT16_RS08590 (MOTT16_08595)	rpsK	1958780..1959169 (-)	390	WP_007115567.1	30S ribosomal protein S11	-
MOTT16_RS08595 (MOTT16_08600)	rpsM	1959190..1959546 (-)	357	WP_007115566.1	30S ribosomal protein S13	-
MOTT16_RS08600 (MOTT16_08605)	rpmJ	1959702..1959818 (-)	117	WP_040403280.1	50S ribosomal protein L36	-

Sequence

Protein

• Length: 225 a.a.
• Molecular weight: 24545.45 Da
• Isoelectric Point: 6.9418

>NTDB_id=211498 MOTT16_RS08560 WP_099834374.1 1954572..1955249(+) (radC) [Moraxella osloensis strain TT16]
MAIKDWHQDERPREKLLQKGAESLSDSEILAIFLRTGTKDQSAIELARGLIEKFGSLAQLLSAPSEAVMACHGIGMAKYA
QILASLEMGKRYLASQVKQAPTLNASQLVKDYLTTQLRPLNREVFAVLFLTNQLTLIQYEVLFTGGISSCSVCVREVLRC
ALKYGASQLIIAHNHPSTSARASQADLEITASLAKACELVDMTLIDHIIVGQDGTLSLQETGKMP

Nucleotide

• Length: 678 bp

>NTDB_id=211498 MOTT16_RS08560 WP_099834374.1 1954572..1955249(+) (radC) [Moraxella osloensis strain TT16]
ATGGCAATCAAAGACTGGCACCAAGACGAGCGCCCCAGAGAAAAGCTACTGCAAAAAGGCGCTGAGAGTCTATCCGATAG
CGAGATTTTGGCAATATTCTTACGCACAGGCACCAAAGACCAATCCGCTATCGAACTGGCTCGTGGCTTGATTGAAAAAT
TTGGCAGTCTGGCTCAGTTACTATCTGCGCCTAGTGAAGCAGTCATGGCGTGTCATGGTATCGGCATGGCAAAATACGCG
CAGATTTTGGCAAGCCTTGAGATGGGCAAACGCTACCTTGCCAGCCAAGTCAAACAAGCCCCTACCCTTAACGCCAGCCA
ATTGGTCAAAGACTATCTGACTACGCAGCTGCGACCGCTCAATCGCGAGGTGTTTGCGGTACTGTTTTTGACCAATCAAC
TCACCTTAATCCAGTATGAGGTATTATTCACAGGTGGTATCTCATCGTGCTCGGTGTGTGTGCGGGAAGTGTTGCGCTGT
GCGTTAAAATACGGGGCAAGTCAGCTTATTATCGCCCATAATCACCCAAGCACCTCTGCCAGAGCGTCACAGGCAGATCT
AGAGATTACCGCAAGTTTGGCAAAGGCATGTGAACTGGTGGATATGACTTTGATTGACCATATTATCGTGGGTCAAGATG
GCACGCTTTCTTTACAAGAAACAGGCAAGATGCCTTAG

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (105-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	43.81	93.333	0.409
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	37.445	100	0.378