Detailed information NTG0211447

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: KSH_RS08260
• Genome accession: NZ_CP024180
• Coordinates: 1859140..1859817 (+)
• Length: 225 a.a.
• NCBI ID: WP_099808443.1
• Uniprot ID: -
• Organism: Moraxella osloensis strain KSH
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1854140..1864817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSH_RS08230 (KSH_08220)	murA	1854166..1855431 (-)	1266	WP_099808439.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
KSH_RS08235 (KSH_08225)	-	1855452..1855709 (-)	258	WP_036594190.1	BolA/IbaG family iron-sulfur metabolism protein	-
KSH_RS08240 (KSH_08230)	-	1855802..1856206 (-)	405	WP_099808440.1	YraN family protein	-
KSH_RS08245 (KSH_08235)	-	1856264..1856674 (+)	411	WP_076776769.1	hypothetical protein	-
KSH_RS08250 (KSH_08240)	rsmI	1856699..1857547 (+)	849	WP_099808441.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-
KSH_RS08255 (KSH_08245)	coaBC	1857730..1859052 (-)	1323	WP_099808442.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
KSH_RS08260 (KSH_08250)	radC	1859140..1859817 (+)	678	WP_099808443.1	RadC family protein	Machinery gene
KSH_RS08265 (KSH_08255)	-	1859814..1860383 (-)	570	WP_099808444.1	DUF4126 domain-containing protein	-
KSH_RS08270 (KSH_08260)	-	1860437..1861189 (-)	753	WP_099808445.1	TSUP family transporter	-
KSH_RS08275 (KSH_08265)	rplQ	1861278..1861637 (-)	360	WP_036593417.1	50S ribosomal protein L17	-
KSH_RS08280 (KSH_08270)	-	1861658..1862665 (-)	1008	WP_007115569.1	DNA-directed RNA polymerase subunit alpha	-
KSH_RS08285 (KSH_08275)	rpsD	1862695..1863336 (-)	642	WP_099808446.1	30S ribosomal protein S4	-
KSH_RS08290 (KSH_08280)	rpsK	1863347..1863736 (-)	390	WP_007115567.1	30S ribosomal protein S11	-
KSH_RS08295 (KSH_08285)	rpsM	1863757..1864113 (-)	357	WP_007115566.1	30S ribosomal protein S13	-
KSH_RS08300 (KSH_08290)	rpmJ	1864269..1864385 (-)	117	WP_040403280.1	50S ribosomal protein L36	-

Sequence

Protein

• Length: 225 a.a.
• Molecular weight: 24660.54 Da
• Isoelectric Point: 6.9418

>NTDB_id=211447 KSH_RS08260 WP_099808443.1 1859140..1859817(+) (radC) [Moraxella osloensis strain KSH]
MAIKDWHQDERPREKLLQKGAESLSDSEILAIFLRTGTKDQSAIELARGLIERFGSLAQLLSAPSEEVMACHGIGMAKYA
QILASLEMGKRYLASQVKQAPTLNASQLVKDYLTTQLRPLNREVFAVLFLTNQLTLIQYEVLFTGGISSCSVCVREVLRC
ALKYGASQLIIAHNHPSTSATASQADLEITRSLAKACQLVDMTLIDHIIVGQDGTLSLQETGKMP

Nucleotide

• Length: 678 bp

>NTDB_id=211447 KSH_RS08260 WP_099808443.1 1859140..1859817(+) (radC) [Moraxella osloensis strain KSH]
ATGGCAATCAAAGACTGGCACCAAGACGAGCGCCCCAGAGAAAAGCTACTGCAAAAAGGCGCTGAGAGTCTATCCGATAG
CGAGATTTTGGCAATATTCTTACGCACAGGCACCAAAGACCAATCCGCTATCGAACTGGCTCGTGGCTTGATTGAAAGAT
TTGGCAGTCTGGCTCAGTTACTATCTGCGCCTAGTGAAGAAGTTATGGCGTGTCACGGTATCGGCATGGCAAAATACGCG
CAGATTTTGGCAAGCCTTGAGATGGGCAAACGCTACCTTGCCAGCCAAGTCAAACAAGCTCCTACCCTTAACGCCAGTCA
GTTGGTCAAAGACTATCTGACTACGCAGCTGCGACCGCTCAATCGCGAGGTGTTTGCGGTGCTGTTTTTGACCAATCAGC
TCACCTTAATCCAGTATGAGGTATTATTCACAGGCGGTATTTCATCGTGCTCAGTATGTGTGCGGGAAGTGTTGCGCTGT
GCGTTAAAATACGGGGCAAGTCAGCTTATTATCGCCCACAATCACCCAAGTACCTCTGCCACGGCGTCACAAGCAGATCT
GGAAATTACTCGCAGTTTGGCAAAAGCGTGTCAGCTTGTCGATATGACTTTGATTGACCATATTATCGTGGGTCAAGATG
GCACGCTTTCTTTACAAGAAACAGGCAAGATGCCTTAG

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-80)

• RadC-like JAB domain (RadC) (105-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	42.857	93.333	0.4
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	38.767	100	0.391