Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   YHS_RS00385 Genome accession   NZ_CP024176
Coordinates   81438..83591 (+) Length   717 a.a.
NCBI ID   WP_099807411.1    Uniprot ID   -
Organism   Moraxella osloensis strain YHS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 76438..88591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YHS_RS00365 (YHS_00365) - 77005..77799 (+) 795 WP_099833328.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  YHS_RS00370 (YHS_00370) argA 77881..79239 (-) 1359 WP_036595096.1 amino-acid N-acetyltransferase -
  YHS_RS00375 (YHS_00375) - 79757..80290 (+) 534 WP_076775416.1 hypothetical protein -
  YHS_RS00380 (YHS_00380) - 80386..81282 (-) 897 WP_099833329.1 patatin-like phospholipase family protein -
  YHS_RS00385 (YHS_00385) recG 81438..83591 (+) 2154 WP_099807411.1 ATP-dependent DNA helicase RecG Machinery gene
  YHS_RS00390 (YHS_00390) - 83813..83992 (+) 180 WP_099807412.1 hypothetical protein -
  YHS_RS00395 (YHS_00395) - 84258..86075 (+) 1818 WP_099833330.1 alkaline phosphatase D family protein -
  YHS_RS00400 (YHS_00400) - 86137..87798 (-) 1662 WP_099833331.1 electron transfer flavoprotein-ubiquinone oxidoreductase -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 79471.50 Da        Isoelectric Point: 7.1367

>NTDB_id=211358 YHS_RS00385 WP_099807411.1 81438..83591(+) (recG) [Moraxella osloensis strain YHS]
MTLKPDIFNLPVTALAGVGSKIAEQLDQLGIERVFDLLLHLPRDYEDRSRLVNMCDVVDGQSALLQGTVVRVDNKKMGLS
VTLQDSTAQTTLRFFKVYRGLTETMAVGNTLRVFGEISISKYGTQISHPEYEIITGHQPLTNTGLIPVYPTVKNLHQNKL
RSLIRLALQTVKQANPVMATISDAEWQIVQNALSQQFPLLAGSHNPFGEFSLLEAISFIHQPPIYTDLNKQILVLEALKN
RSHPTCQRLIIEEMLAHQLSLLYRKQQLYQHKAPRCDATSALANRLLANLPFTPTHAQNRVVAEIVKDLSTSVPMLRLVQ
GDVGAGKTLVAALAACYALDSGWQVAVMAPTEILAEQHLNNFKSWFKPLGIGVGWLVGKQTAKAREKALQQVQDNEVQIV
VGTHALFQEHVNFAKLGLVIIDEQHRFGVEQRMALVDKGLAHTTPHQLIMTATPIPRTLAMSAFGDMDTSIIDELPPNRT
PITTVTISRDRRDEVIERIAANCEQGKQAYWVCPLVEESTMLDAQAAEATYADLNDRLNLNIGLVHGKMKPNDKQAVMAD
FKAGKTALLVATTVIEVGVDVPNASLMVIENAERLGLSQLHQLRGRVGRGTQKSFCVLLYQTPLSETGIERLNVLRDSND
GFVIAQKDLELRGAGELLGKRQTGFDSYYVSDLARDESLLIVAQAIAKYLIADENRKSQVQQYISHWTPDAIKYINA

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=211358 YHS_RS00385 WP_099807411.1 81438..83591(+) (recG) [Moraxella osloensis strain YHS]
ATGACGCTAAAACCTGACATCTTTAATCTTCCTGTTACTGCGCTCGCTGGCGTGGGTAGCAAAATCGCTGAACAGCTTGA
CCAACTTGGTATTGAGCGCGTGTTTGATTTGTTGCTACATTTGCCGCGTGATTATGAAGATCGCAGCCGACTGGTCAACA
TGTGTGATGTCGTCGATGGACAATCGGCATTGCTACAAGGCACCGTTGTCCGCGTCGACAACAAAAAGATGGGCTTGAGC
GTGACATTGCAAGATAGCACAGCGCAAACAACATTACGCTTTTTCAAGGTCTATCGTGGATTGACCGAAACCATGGCAGT
GGGCAATACCTTGCGTGTGTTTGGCGAAATCAGTATAAGTAAGTATGGCACCCAAATCAGCCACCCTGAATATGAAATTA
TTACTGGACATCAACCCCTGACCAATACAGGGCTCATACCTGTTTATCCAACGGTCAAAAACTTGCATCAAAATAAACTG
CGTAGCTTGATTCGACTTGCGCTGCAGACGGTTAAACAAGCCAATCCTGTGATGGCTACTATCAGTGATGCTGAGTGGCA
AATCGTACAAAATGCGCTGAGCCAACAGTTTCCGTTACTGGCAGGTAGCCACAACCCATTTGGGGAATTTAGCTTGCTAG
AAGCCATTAGCTTTATCCATCAGCCACCGATTTATACCGATTTGAACAAGCAAATTTTGGTATTAGAGGCGTTAAAAAAT
CGCAGTCATCCGACGTGTCAGCGGCTCATTATCGAAGAAATGCTGGCGCACCAGCTGAGTCTACTGTACCGCAAGCAACA
ACTTTATCAGCATAAAGCACCGCGCTGCGATGCCACAAGCGCGCTTGCCAATCGGCTGTTAGCCAATTTACCTTTTACCC
CTACCCATGCCCAAAATCGGGTAGTAGCGGAAATCGTCAAAGATTTGTCAACGTCAGTGCCCATGCTGCGACTCGTGCAA
GGCGATGTTGGCGCAGGCAAAACCTTGGTAGCAGCTTTGGCGGCGTGCTATGCGCTTGATAGCGGCTGGCAAGTGGCAGT
GATGGCACCGACAGAGATTTTGGCGGAGCAACATCTTAATAACTTTAAAAGCTGGTTTAAACCGCTTGGCATCGGTGTGG
GTTGGCTGGTGGGCAAGCAAACAGCCAAAGCGCGTGAAAAAGCCTTGCAACAAGTACAAGACAACGAGGTACAAATCGTG
GTCGGTACGCATGCGCTATTTCAAGAACATGTCAATTTTGCCAAGTTGGGCTTGGTGATTATCGATGAGCAGCACCGTTT
TGGGGTGGAGCAGCGAATGGCGCTAGTAGATAAAGGCTTGGCGCATACCACACCGCATCAGCTGATTATGACAGCCACAC
CCATACCGCGTACCCTTGCCATGAGTGCATTTGGTGATATGGATACGTCCATCATTGATGAGCTGCCGCCCAACCGCACC
CCCATCACCACCGTCACCATAAGCCGTGACCGACGTGATGAAGTGATTGAACGTATCGCTGCCAACTGCGAGCAAGGCAA
ACAAGCTTACTGGGTGTGCCCACTGGTCGAAGAGTCAACCATGCTTGATGCGCAAGCCGCTGAAGCGACTTATGCCGATT
TGAATGACAGGCTCAATCTGAACATTGGTTTGGTGCATGGCAAAATGAAGCCCAATGACAAACAAGCGGTCATGGCGGAT
TTTAAAGCGGGTAAAACCGCTTTGCTAGTGGCTACCACCGTGATTGAAGTCGGGGTCGATGTGCCCAATGCTTCGCTGAT
GGTGATTGAAAATGCTGAGCGATTAGGGTTATCGCAATTGCACCAACTACGCGGACGCGTGGGGCGTGGCACCCAAAAAA
GCTTTTGCGTATTGCTTTATCAAACGCCATTGTCAGAAACGGGTATCGAGCGGCTCAATGTGCTGCGAGATAGCAATGAT
GGCTTTGTGATTGCGCAAAAAGATTTGGAACTGCGCGGTGCAGGGGAGCTTTTGGGTAAACGGCAGACAGGATTTGACAG
CTACTATGTCAGTGACCTAGCCAGAGATGAAAGCTTGCTAATCGTGGCGCAAGCGATTGCTAAGTACCTAATTGCTGACG
AAAATCGCAAATCACAAGTGCAGCAATATATCAGCCATTGGACACCCGATGCCATCAAATACATTAACGCGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(318-457)

Helicase conserved C-terminal domain (Helicase_C)

(501-610)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(639-702)

RecG wedge domain (RecG_wedge)

(16-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

44.778

97.49

0.437
  recG Bacillus subtilis subsp. subtilis str. 168

38.184

96.792

0.37

Multiple sequence alignment