Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   XF_RS07820 Genome accession   NC_002488
Coordinates   1722813..1723409 (+) Length   198 a.a.
NCBI ID   WP_031337832.1    Uniprot ID   Q9PCH1
Organism   Xylella fastidiosa 9a5c     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717813..1728409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS14950 (XF1804) - 1717816..1718697 (+) 882 WP_010894273.1 DNA adenine methylase -
  XF_RS14955 - 1719199..1719546 (-) 348 WP_228762867.1 hypothetical protein -
  XF_RS14960 - 1719534..1720034 (-) 501 WP_229716482.1 hypothetical protein -
  XF_RS07810 (XF1807) dnaX 1720467..1722293 (+) 1827 WP_010894275.1 DNA polymerase III subunit gamma/tau -
  XF_RS07815 (XF1808) - 1722300..1722620 (+) 321 WP_031336616.1 YbaB/EbfC family nucleoid-associated protein -
  XF_RS07820 (XF1809) recR 1722813..1723409 (+) 597 WP_031337832.1 recombination mediator RecR Machinery gene
  XF_RS07825 (XF1810) - 1723471..1723815 (+) 345 WP_010894278.1 histidine triad nucleotide-binding protein -
  XF_RS07830 (XF1811) - 1723883..1724404 (-) 522 WP_031336615.1 Slp family lipoprotein -
  XF_RS07835 (XF1812) - 1724298..1726349 (-) 2052 WP_042463248.1 transglutaminaseTgpA domain-containing protein -
  XF_RS07840 - 1726342..1727301 (-) 960 WP_023906585.1 DUF58 domain-containing protein -
  XF_RS07845 (XF1813) - 1727304..1728257 (-) 954 WP_010894280.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21835.89 Da        Isoelectric Point: 6.5785

>NTDB_id=21130 XF_RS07820 WP_031337832.1 1722813..1723409(+) (recR) [Xylella fastidiosa 9a5c]
MSTHLLEQLIDAFRILPGVGQKTAQRMAYHVLEREREGGQRLADVLSRAIEKIGHCTECRDFSETKICAICANYSRDRHQ
LCVVESPPDRLAIEQATGYRGLYFILQGRLSPLDGIGPHELGLDHLGQRLAAGEVTELIIATNATVEGETTAHYLALLAR
QHGIRPSRLAQGLPLGGELEYLDRGTLSHAFGTRTEVV

Nucleotide


Download         Length: 597 bp        

>NTDB_id=21130 XF_RS07820 WP_031337832.1 1722813..1723409(+) (recR) [Xylella fastidiosa 9a5c]
ATGAGTACACACTTGCTTGAGCAGTTAATTGATGCCTTCCGTATCTTGCCAGGTGTCGGTCAGAAGACCGCGCAGCGCAT
GGCCTACCATGTGCTCGAACGCGAGCGTGAAGGTGGGCAGCGCTTGGCTGATGTGCTGAGCCGTGCGATTGAAAAAATTG
GTCATTGTACGGAGTGTCGTGACTTCAGTGAGACCAAAATCTGTGCGATCTGTGCTAACTACAGCCGTGACCGTCATCAG
TTGTGCGTGGTCGAGTCCCCCCCTGATCGGCTGGCGATTGAGCAAGCCACTGGCTATCGTGGACTATATTTTATTTTGCA
GGGGCGCCTGTCCCCGCTGGATGGGATCGGCCCTCATGAACTTGGGTTGGACCATTTGGGACAACGTCTTGCTGCAGGTG
AGGTGACGGAGCTCATCATTGCGACTAATGCGACGGTGGAGGGTGAGACGACAGCGCACTACTTGGCGCTCCTGGCGCGC
CAACACGGCATACGCCCCAGCCGACTGGCACAAGGTTTGCCCTTGGGTGGGGAGCTGGAATACTTAGACCGCGGCACTCT
TTCGCATGCGTTCGGCACCCGTACTGAAGTGGTTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PCH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.75

96.97

0.424
  recR Bacillus subtilis subsp. subtilis str. 168

42.188

96.97

0.409
  recR Streptococcus pneumoniae R6

38.542

96.97

0.374

Multiple sequence alignment