Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   AHTJS_RS08690 Genome accession   NZ_CP018871
Coordinates   1768375..1768794 (-) Length   139 a.a.
NCBI ID   WP_228127575.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain TJS01     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1763375..1773794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS08660 (AHTJS_08645) tadA 1763516..1764028 (-) 513 WP_005080470.1 tRNA adenosine(34) deaminase TadA -
  AHTJS_RS08665 (AHTJS_08650) - 1764033..1765157 (-) 1125 WP_171055793.1 enoyl-CoA hydratase/isomerase family protein -
  AHTJS_RS08670 (AHTJS_08655) ung 1765154..1765867 (-) 714 WP_075316509.1 uracil-DNA glycosylase -
  AHTJS_RS08675 (AHTJS_08660) - 1765914..1766510 (-) 597 WP_017394547.1 6-pyruvoyl trahydropterin synthase family protein -
  AHTJS_RS08680 (AHTJS_08665) gspK 1766596..1767573 (-) 978 WP_075315662.1 type II secretion system minor pseudopilin GspK -
  AHTJS_RS08685 (AHTJS_08670) xcpW 1767575..1768369 (-) 795 WP_075315663.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AHTJS_RS08690 (AHTJS_08675) xcpV 1768375..1768794 (-) 420 WP_228127575.1 type II secretion system minor pseudopilin GspI Machinery gene
  AHTJS_RS08695 (AHTJS_08680) - 1768862..1769473 (-) 612 WP_075315664.1 type II secretion system protein -
  AHTJS_RS08700 (AHTJS_08685) - 1769488..1770093 (-) 606 WP_017394545.1 TetR/AcrR family transcriptional regulator -
  AHTJS_RS08705 (AHTJS_08690) - 1770135..1770908 (-) 774 WP_005080456.1 TatD family hydrolase -
  AHTJS_RS08710 (AHTJS_08695) - 1770929..1771273 (-) 345 WP_004639306.1 PilZ domain-containing protein -
  AHTJS_RS08715 (AHTJS_08700) - 1771596..1771904 (-) 309 WP_075315665.1 hypothetical protein -
  AHTJS_RS08720 (AHTJS_08705) - 1772048..1773031 (-) 984 WP_075315666.1 DNA polymerase III subunit delta' -
  AHTJS_RS08725 (AHTJS_08710) kdsB 1773033..1773794 (-) 762 WP_005080453.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15306.64 Da        Isoelectric Point: 6.4681

>NTDB_id=211169 AHTJS_RS08690 WP_228127575.1 1768375..1768794(-) (xcpV) [Acinetobacter haemolyticus strain TJS01]
MAFDLAAGPSVARFNRVSGFTLLEVMVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVAMMEINKEWLDGT
QSKQITSQGETWQIDKKAQATISPKVQRIELQVSLFNVDQDKVEAGVGHLVFFNHQTES

Nucleotide


Download         Length: 420 bp        

>NTDB_id=211169 AHTJS_RS08690 WP_228127575.1 1768375..1768794(-) (xcpV) [Acinetobacter haemolyticus strain TJS01]
ATAGCTTTCGATCTTGCAGCAGGGCCAAGCGTTGCTCGATTTAATCGTGTCTCAGGATTTACCCTGCTTGAAGTGATGGT
GGCTTTGGCAATTTTTGCAGTGGCTGCAATCGCGCTAACAAAAATAGCCATGCAATATACGCAAGCAACCTCAAATGCAA
TTTTACGTACTAAAGCTCAATTTGTTGCAATGAATGAGGTTGCAATGATGGAGATTAACAAAGAGTGGTTGGACGGAACC
CAATCCAAACAAATCACTTCACAAGGTGAAACATGGCAAATTGATAAAAAAGCACAAGCAACGATTAGCCCCAAAGTTCA
GCGGATCGAATTACAAGTGAGTTTATTTAACGTTGATCAAGATAAAGTTGAAGCGGGTGTTGGTCATCTAGTGTTTTTCA
ATCATCAGACTGAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(56-114)

Prokaryotic N-terminal methylation motif (N_methyl)

(15-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.167

86.331

0.683

Multiple sequence alignment