Detailed information NTG0211169

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CR539_RS18700
• Genome accession: NZ_CP024147
• Coordinates: 3607886..3608878 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 14EC033
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3602886..3613878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CR539_RS18675 (CR539_18610)	ygbN	3603541..3604905 (+)	1365	Protein_3400	GntP family transporter	-
CR539_RS18680 (CR539_18615)	-	3604944..3605180 (-)	237	WP_101969499.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CR539_RS18685 (CR539_18620)	-	3605191..3606618 (-)	1428	WP_032281499.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CR539_RS18690 (CR539_18625)	-	3606618..3607211 (-)	594	WP_032281500.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CR539_RS18695 (CR539_18630)	-	3607358..3607765 (+)	408	WP_032281501.1	MarR family transcriptional regulator	-
CR539_RS18700 (CR539_18635)	rpoS	3607886..3608878 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CR539_RS18705 (CR539_18640)	nlpD	3608941..3610035 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CR539_RS18710 (CR539_18645)	pcm	3610220..3610846 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CR539_RS18715 (CR539_18650)	surE	3610840..3611601 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CR539_RS18720 (CR539_18655)	truD	3611582..3612631 (-)	1050	WP_032281504.1	tRNA pseudouridine(13) synthase TruD	-
CR539_RS18725 (CR539_18660)	ispF	3612628..3613107 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CR539_RS18730 (CR539_18665)	ispD	3613107..3613817 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=211169 CR539_RS18700 WP_000081550.1 3607886..3608878(-) (rpoS) [Escherichia coli strain 14EC033]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=211169 CR539_RS18700 WP_000081550.1 3607886..3608878(-) (rpoS) [Escherichia coli strain 14EC033]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAACTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTTGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715