Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CR539_RS18075 Genome accession   NZ_CP024147
Coordinates   3498119..3498856 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 14EC033     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493119..3503856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR539_RS18060 (CR539_17995) clpC 3493573..3496146 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  CR539_RS18065 (CR539_18000) yfiH 3496276..3497007 (-) 732 WP_101969496.1 purine nucleoside phosphorylase YfiH -
  CR539_RS18070 (CR539_18005) rluD 3497004..3497984 (-) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CR539_RS18075 (CR539_18010) comL 3498119..3498856 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CR539_RS18085 (CR539_18020) raiA 3499127..3499468 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CR539_RS18090 pheL 3499572..3499619 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CR539_RS18095 (CR539_18025) pheA 3499718..3500878 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CR539_RS18100 (CR539_18030) tyrA 3500921..3502042 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CR539_RS18105 (CR539_18035) aroF 3502053..3503123 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CR539_RS18110 (CR539_18040) yfiL 3503333..3503698 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=211165 CR539_RS18075 WP_000197686.1 3498119..3498856(+) (comL) [Escherichia coli strain 14EC033]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=211165 CR539_RS18075 WP_000197686.1 3498119..3498856(+) (comL) [Escherichia coli strain 14EC033]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376