Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AHTJS_RS01990 Genome accession   NZ_CP018871
Coordinates   408108..408767 (-) Length   219 a.a.
NCBI ID   WP_004641105.1    Uniprot ID   N9GSC1
Organism   Acinetobacter haemolyticus strain TJS01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403108..413767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS01955 (AHTJS_01945) - 403739..404401 (+) 663 WP_075314658.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AHTJS_RS01960 (AHTJS_01950) - 404421..405053 (+) 633 WP_004641117.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  AHTJS_RS01965 (AHTJS_01955) - 405065..405352 (+) 288 WP_075314660.1 STAS domain-containing protein -
  AHTJS_RS01970 (AHTJS_01960) - 405403..405945 (-) 543 WP_075314662.1 hypothetical protein -
  AHTJS_RS01975 (AHTJS_01965) - 405947..406963 (-) 1017 WP_005086867.1 CorA family divalent cation transporter -
  AHTJS_RS01980 (AHTJS_01970) - 407137..407721 (+) 585 WP_075314664.1 TIGR00730 family Rossman fold protein -
  AHTJS_RS01985 (AHTJS_01975) - 407732..408139 (+) 408 WP_020846335.1 NUDIX hydrolase -
  AHTJS_RS01990 (AHTJS_01980) comF 408108..408767 (-) 660 WP_004641105.1 ComF family protein Machinery gene
  AHTJS_RS01995 (AHTJS_01985) recG 408760..410805 (-) 2046 WP_075314674.1 ATP-dependent DNA helicase RecG -
  AHTJS_RS02000 (AHTJS_01990) - 410824..411651 (+) 828 WP_005086857.1 NAD-dependent epimerase/dehydratase family protein -
  AHTJS_RS02005 (AHTJS_01995) - 411795..412775 (+) 981 WP_005086855.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25089.23 Da        Isoelectric Point: 9.6664

>NTDB_id=211157 AHTJS_RS01990 WP_004641105.1 408108..408767(-) (comF) [Acinetobacter haemolyticus strain TJS01]
MFKLLGSQTQRFLDHFTACDLCEIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVACHYQYPINRIIQQFKYEQKLHHQ
RVLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTLNIPVWQPVRRLAQHSQKGLSRLERLENIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSKSLRQLGCQQIYAVCLAAGGVKDSILPSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=211157 AHTJS_RS01990 WP_004641105.1 408108..408767(-) (comF) [Acinetobacter haemolyticus strain TJS01]
ATGTTTAAGTTACTTGGCAGTCAAACCCAACGATTCTTAGATCATTTCACTGCATGTGATTTATGTGAAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGTTAAAACAAACAATTGAACGCAATCAACAGCAGG
TCTTCGTTGCCTGCCATTATCAATATCCCATCAACCGAATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGAGTGCTCAGTGGCATATTACAACAAGTTAGACTTCCCAAAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGATCG
ATTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGCTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCCCAACACTCTCAAAAAGGCTTATCCCGCCTAGAACGTCTGGAGAATATCGAGCATCAGTTTATT
GCTCATCCACCGAATAAAATCCGTTATCGCAAAGTCTTAATTGTTGATGATGTCATCACTACTGGCAGCTCGATTGATGC
ATTATCCAAAAGCTTACGCCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGTGGGGTTAAGGACTCAA
TCCTGCCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9GSC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.029

95.434

0.63
  comF Acinetobacter baumannii D1279779

65.55

95.434

0.626

Multiple sequence alignment