Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LA20249_RS08350 | Genome accession | NZ_CP018867 |
| Coordinates | 1746075..1746668 (+) | Length | 197 a.a. |
| NCBI ID | WP_057738859.1 | Uniprot ID | A0A2K9HII1 |
| Organism | Companilactobacillus alimentarius DSM 20249 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1741075..1751668
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LA20249_RS08340 (LA20249_08325) | gyrA | 1743029..1745542 (+) | 2514 | WP_057738863.1 | DNA gyrase subunit A | - |
| LA20249_RS08345 (LA20249_08330) | rpsF | 1745742..1746038 (+) | 297 | WP_057738861.1 | 30S ribosomal protein S6 | - |
| LA20249_RS08350 (LA20249_08335) | ssb | 1746075..1746668 (+) | 594 | WP_057738859.1 | single-stranded DNA-binding protein | Machinery gene |
| LA20249_RS08355 (LA20249_08340) | rpsR | 1746697..1746933 (+) | 237 | WP_057738857.1 | 30S ribosomal protein S18 | - |
| LA20249_RS11870 (LA20249_08345) | - | 1747152..1747304 (+) | 153 | WP_083477919.1 | helix-turn-helix transcriptional regulator | - |
| LA20249_RS08365 (LA20249_08350) | - | 1747604..1749604 (+) | 2001 | WP_057738855.1 | DHH family phosphoesterase | - |
| LA20249_RS08370 (LA20249_08355) | rplI | 1749617..1750072 (+) | 456 | WP_057738853.1 | 50S ribosomal protein L9 | - |
| LA20249_RS08375 (LA20249_08360) | dnaB | 1750080..1751459 (+) | 1380 | WP_057738851.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 21828.08 Da Isoelectric Point: 4.7512
>NTDB_id=211137 LA20249_RS08350 WP_057738859.1 1746075..1746668(+) (ssb) [Companilactobacillus alimentarius DSM 20249]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVENFSLLESRAESEKRNSGSNNSNQSSNYNNSNQSNQSPYSNNNSYNSNNGNSNTNNSSNANNS
NNANSNNNQSNNSNNNMSDPFADNSKPIDISDDDLPF
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVENFSLLESRAESEKRNSGSNNSNQSSNYNNSNQSNQSPYSNNNSYNSNNGNSNTNNSSNANNS
NNANSNNNQSNNSNNNMSDPFADNSKPIDISDDDLPF
Nucleotide
Download Length: 594 bp
>NTDB_id=211137 LA20249_RS08350 WP_057738859.1 1746075..1746668(+) (ssb) [Companilactobacillus alimentarius DSM 20249]
ATGATTAATCGAGTAGTTCTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCCAATGGGGCAGCGGTTGC
TAGTTTTACTGTTGCTGTTAATCGACAATTTACTAATTCTCAAGGTGAACGCGAAGCCGATTTTATTAATTGTGTTATTT
GGAGAAAAGCCGCCGAGAATTTTTCTAATTTTACTAATAAAGGTTCGCTTGTTGGAATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGACAAAGAGTTTATGTAACTGAGGTAGTTGTTGAAAACTTCTCATTACTAGAATCTCGTGC
CGAAAGTGAAAAGAGGAATTCAGGTAGCAATAACTCTAACCAATCTTCTAACTATAATAATTCAAATCAATCAAATCAGT
CTCCATACAGTAACAACAATAGTTACAACAGTAATAACGGCAATTCTAATACTAATAATAGTAGCAATGCTAACAATAGT
AATAATGCCAATAGCAACAATAATCAATCTAACAACTCAAACAATAATATGAGCGATCCGTTTGCTGACAACAGTAAGCC
AATCGACATATCTGATGACGATTTACCATTTTAA
ATGATTAATCGAGTAGTTCTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCCAATGGGGCAGCGGTTGC
TAGTTTTACTGTTGCTGTTAATCGACAATTTACTAATTCTCAAGGTGAACGCGAAGCCGATTTTATTAATTGTGTTATTT
GGAGAAAAGCCGCCGAGAATTTTTCTAATTTTACTAATAAAGGTTCGCTTGTTGGAATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGACAAAGAGTTTATGTAACTGAGGTAGTTGTTGAAAACTTCTCATTACTAGAATCTCGTGC
CGAAAGTGAAAAGAGGAATTCAGGTAGCAATAACTCTAACCAATCTTCTAACTATAATAATTCAAATCAATCAAATCAGT
CTCCATACAGTAACAACAATAGTTACAACAGTAATAACGGCAATTCTAATACTAATAATAGTAGCAATGCTAACAATAGT
AATAATGCCAATAGCAACAATAATCAATCTAACAACTCAAACAATAATATGAGCGATCCGTTTGCTGACAACAGTAAGCC
AATCGACATATCTGATGACGATTTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.914 |
100 |
0.609 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.807 |
100 |
0.538 |