Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LA20249_RS06720 Genome accession   NZ_CP018867
Coordinates   1398170..1399930 (-) Length   586 a.a.
NCBI ID   WP_057738244.1    Uniprot ID   A0A2K9HH62
Organism   Companilactobacillus alimentarius DSM 20249     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393170..1404930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA20249_RS06705 (LA20249_06690) - 1393746..1394477 (-) 732 WP_057738250.1 GntR family transcriptional regulator -
  LA20249_RS06710 (LA20249_06695) - 1394525..1396177 (-) 1653 WP_057738248.1 alpha,alpha-phosphotrehalase -
  LA20249_RS06715 (LA20249_06700) rcrQ 1396443..1398170 (-) 1728 WP_057738246.1 ABC transporter ATP-binding protein Regulator
  LA20249_RS06720 (LA20249_06705) rcrP 1398170..1399930 (-) 1761 WP_057738244.1 ABC transporter ATP-binding protein Regulator
  LA20249_RS06725 (LA20249_06710) - 1399973..1400437 (-) 465 WP_057738242.1 MarR family winged helix-turn-helix transcriptional regulator -
  LA20249_RS06730 (LA20249_06715) - 1400582..1401124 (+) 543 WP_057738240.1 GNAT family N-acetyltransferase -
  LA20249_RS06735 (LA20249_06720) - 1401236..1401919 (-) 684 WP_057738238.1 GTP pyrophosphokinase -
  LA20249_RS06740 (LA20249_06725) codA 1401986..1403215 (-) 1230 WP_057738236.1 cytosine deaminase -
  LA20249_RS06745 (LA20249_06730) - 1403322..1404740 (-) 1419 WP_057738234.1 MFS transporter -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64779.06 Da        Isoelectric Point: 9.5904

>NTDB_id=211133 LA20249_RS06720 WP_057738244.1 1398170..1399930(-) (rcrP) [Companilactobacillus alimentarius DSM 20249]
MLKLFKKLNKKEYLMILASLIFIVVQVGLELEIPSYMSTITEKLEQQGTTVNQILEPGMMMVLLSILSAIALILVGYFAA
HVAAGFTARLRSEIFNKVMDYSTQDIKKFSVSSLLTRSTNDLTQLQQFIAMGLQVIIKAPITAIWAITKIANKGWQWTTA
TGIAVVVLIIMLSFILLMVQPKFKKVQSLTDRLNLVTRENLSGIRVVHAYNAEDYQNDKFNKANKDLTETNLFANRVLAL
MNPGMSFISSTLTLSVYGIGAIIINQATARATRLTLFSNMIVFSSYAMQVILGFLLLSIIFILLPRVTVSVGRINQVLDV
EPSISSPSKHQATKGAGTIEFKNVSFRYPQAEADAVHNLSFQAKQGQTIAIIGSTGSGKSSVMNLIPHLYDVTKGQVLID
GVDVKDYSTAELNDRLGYIPQKAVLFSGSIRSNISFGETDKQASQNDQDIYQALEIAQSRDFVDQKQHKLDSEVAQHGDN
FSGGQKQRLAIARAIARKPEILLFDDSFSALDYETDRKLRGALKTKAAQTTKVIVAQRISTIMDADQIIVLDNGKVAGQG
THSELLKNNEVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=211133 LA20249_RS06720 WP_057738244.1 1398170..1399930(-) (rcrP) [Companilactobacillus alimentarius DSM 20249]
ATGCTTAAATTATTTAAAAAATTGAATAAAAAAGAATATTTAATGATTCTTGCTAGTTTAATTTTTATTGTCGTACAAGT
TGGATTAGAATTAGAAATTCCTAGTTATATGTCGACTATTACTGAAAAATTAGAACAACAAGGAACAACTGTTAATCAGA
TTTTAGAACCTGGGATGATGATGGTTCTTCTGTCTATTCTTAGTGCCATAGCCTTAATCTTAGTTGGTTATTTTGCGGCT
CACGTAGCAGCTGGTTTTACGGCACGATTAAGAAGTGAAATTTTTAATAAAGTTATGGACTATTCAACACAGGATATTAA
AAAGTTCTCTGTCTCCAGCTTATTAACTCGTTCAACCAATGACTTGACACAGTTACAACAATTTATTGCGATGGGCTTGC
AAGTTATTATTAAAGCACCAATTACAGCTATTTGGGCTATTACAAAGATTGCTAACAAGGGTTGGCAATGGACGACTGCA
ACAGGTATAGCGGTGGTAGTCTTAATTATTATGCTGAGTTTTATTTTGTTAATGGTTCAACCTAAGTTCAAAAAAGTTCA
AAGTTTAACCGATCGCTTGAATTTAGTAACTAGAGAGAATTTATCAGGTATCAGAGTGGTTCACGCTTATAATGCTGAGG
ATTACCAAAATGATAAATTCAACAAAGCTAATAAGGATTTAACTGAGACTAATTTGTTTGCTAATCGTGTATTAGCCTTG
ATGAATCCCGGAATGAGCTTTATCTCAAGTACCTTGACTTTATCAGTATATGGAATTGGAGCAATTATTATCAATCAGGC
AACAGCTCGTGCAACAAGATTGACATTATTTAGCAATATGATTGTTTTCTCTTCCTACGCTATGCAAGTAATTTTAGGAT
TCTTACTCCTATCAATTATTTTTATTTTGTTACCACGTGTGACAGTTTCAGTTGGAAGAATCAATCAAGTTTTAGATGTT
GAGCCTTCGATTAGTAGTCCAAGTAAGCATCAAGCAACTAAAGGAGCGGGAACAATTGAATTTAAAAATGTTAGTTTCAG
ATATCCCCAAGCTGAGGCGGACGCAGTTCATAATTTGAGTTTTCAAGCTAAACAAGGACAGACGATTGCCATTATTGGAT
CAACAGGTAGTGGTAAATCCAGCGTTATGAATTTGATCCCTCACCTTTATGATGTTACTAAAGGTCAAGTCTTGATAGAT
GGCGTTGATGTTAAAGATTATTCGACTGCTGAATTGAACGATCGTTTAGGATATATTCCTCAGAAAGCCGTCTTATTCAG
TGGCTCAATTCGTTCGAACATTTCCTTTGGTGAAACAGATAAACAAGCTTCTCAAAACGATCAGGATATTTATCAAGCGT
TGGAAATCGCTCAATCAAGGGATTTTGTTGACCAAAAGCAACATAAATTGGATAGTGAAGTTGCTCAACATGGTGATAAC
TTCTCGGGTGGTCAAAAACAAAGATTGGCAATTGCCAGAGCGATTGCTCGAAAGCCGGAAATACTTCTTTTCGATGATTC
TTTCTCAGCTTTGGATTATGAGACGGATCGTAAGTTGCGTGGTGCTTTGAAAACAAAGGCTGCCCAGACTACAAAAGTCA
TTGTGGCACAAAGGATCAGTACAATTATGGATGCTGATCAAATTATTGTTTTAGATAATGGGAAAGTCGCTGGTCAAGGA
ACACATAGCGAATTATTAAAGAACAATGAGGTTTACCAAGAAATCGCTTATTCACAATTGTCAAAGGAGGAACTTGCCTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-278)

ABC transporter (ABC_tran)

(357-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9HH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.616

100

0.577

Multiple sequence alignment