Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LA20249_RS06715 Genome accession   NZ_CP018867
Coordinates   1396443..1398170 (-) Length   575 a.a.
NCBI ID   WP_057738246.1    Uniprot ID   A0A2K9HH64
Organism   Companilactobacillus alimentarius DSM 20249     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391443..1403170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA20249_RS06695 (LA20249_06680) - 1391772..1392848 (+) 1077 WP_057738254.1 GDSL-type esterase/lipase family protein -
  LA20249_RS06700 (LA20249_06685) - 1392937..1393659 (+) 723 WP_057738252.1 UTRA domain-containing protein -
  LA20249_RS06705 (LA20249_06690) - 1393746..1394477 (-) 732 WP_057738250.1 GntR family transcriptional regulator -
  LA20249_RS06710 (LA20249_06695) - 1394525..1396177 (-) 1653 WP_057738248.1 alpha,alpha-phosphotrehalase -
  LA20249_RS06715 (LA20249_06700) rcrQ 1396443..1398170 (-) 1728 WP_057738246.1 ABC transporter ATP-binding protein Regulator
  LA20249_RS06720 (LA20249_06705) rcrP 1398170..1399930 (-) 1761 WP_057738244.1 ABC transporter ATP-binding protein Regulator
  LA20249_RS06725 (LA20249_06710) - 1399973..1400437 (-) 465 WP_057738242.1 MarR family winged helix-turn-helix transcriptional regulator -
  LA20249_RS06730 (LA20249_06715) - 1400582..1401124 (+) 543 WP_057738240.1 GNAT family N-acetyltransferase -
  LA20249_RS06735 (LA20249_06720) - 1401236..1401919 (-) 684 WP_057738238.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64318.52 Da        Isoelectric Point: 5.9748

>NTDB_id=211132 LA20249_RS06715 WP_057738246.1 1396443..1398170(-) (rcrQ) [Companilactobacillus alimentarius DSM 20249]
MKVIEGIKKYGLEYIKPLILAIIFAMAGSIFTIVGPSQLSKITDLISKGLFTTINLQDVMRIVIILAIIYVAAAVMSYGQ
GFIMATITQKFTQKLRTKITEKINHLPLQYFDTHNEGDTLSRVTNDLDTVGQSLNQSLGLLVSAVTLLIGSIIMMFTTNV
TLGFTAVLSVLLGFVLTIFLISKSQRYFYNQQNKLADVSGYLEEVYAGHDVVKTYNYTNEARTEFEEMNDDLQSNVWKSQ
FLSGIMQPLMTFIGNFGYVMVSVIGAVLVLNGQITIGVIVAFMIYVRLFTQPLTQITQAFTSLQSAQAAMKRVFTFLGEK
EVASDDNKQSLVGTKGNVEFDNVEFGYLPGQKIIKNFTMKAKAGQKIAIVGPTGSGKTTTVNLLMRFYDLNAGKIKIDGV
NIEDMKRSDVRNQFDMVLQDAWLFEDTVKNNLIYNQTGVTDEQIKEATKAVDLDHFIETLPKGYDTVLDDSVSLSVGQKQ
LLTIARALIRNKPMLILDEATSSVDTRTEEQIQKAMDILMKNRTSFVIAHRLSTIKNADLILVVKDGEIIERGTHDELMH
ENGFYEEMYNSQFQK

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=211132 LA20249_RS06715 WP_057738246.1 1396443..1398170(-) (rcrQ) [Companilactobacillus alimentarius DSM 20249]
ATGAAAGTAATTGAGGGTATTAAGAAATATGGTTTGGAATACATTAAACCGTTAATTCTAGCAATTATTTTTGCGATGGC
GGGAAGTATTTTTACAATTGTAGGTCCAAGCCAATTAAGTAAAATTACTGATTTAATCAGTAAGGGACTCTTTACTACGA
TTAATCTTCAAGATGTAATGCGAATTGTTATAATCCTAGCAATTATCTATGTGGCAGCAGCAGTTATGTCATATGGACAA
GGTTTCATTATGGCTACCATTACCCAGAAGTTTACTCAAAAGTTAAGAACTAAGATTACTGAAAAAATTAATCATCTTCC
ATTGCAGTATTTTGATACTCATAATGAAGGGGATACTTTAAGTCGAGTTACTAATGATTTGGATACAGTTGGTCAATCCT
TGAACCAAAGTTTGGGCCTGCTTGTTTCAGCGGTAACCTTATTGATAGGTAGCATTATAATGATGTTTACAACTAATGTT
ACTTTAGGATTTACAGCTGTTCTATCTGTTTTATTAGGATTTGTTTTAACAATCTTCTTAATTTCGAAATCACAACGTTA
CTTTTACAATCAACAGAATAAGTTAGCTGATGTGTCGGGATATTTAGAAGAGGTTTATGCAGGTCACGATGTAGTAAAGA
CATACAATTATACTAATGAGGCTAGAACAGAATTTGAAGAAATGAATGATGATTTGCAATCTAATGTATGGAAATCGCAG
TTCTTATCCGGAATCATGCAACCATTGATGACCTTTATTGGTAATTTTGGTTACGTAATGGTGAGTGTTATCGGAGCAGT
TTTAGTGCTAAATGGTCAAATAACAATTGGTGTAATTGTTGCTTTCATGATTTACGTACGACTCTTTACGCAACCATTGA
CACAGATTACACAGGCATTTACTAGTTTACAATCAGCGCAAGCCGCTATGAAACGAGTTTTTACTTTCCTTGGGGAAAAA
GAAGTTGCGTCAGATGACAATAAGCAAAGCTTGGTTGGGACCAAAGGAAATGTTGAATTTGATAACGTTGAATTTGGATA
TCTTCCTGGTCAAAAAATCATTAAGAACTTTACAATGAAAGCTAAGGCTGGTCAAAAAATAGCTATTGTTGGTCCAACTG
GTTCAGGTAAAACGACAACAGTTAATTTGTTAATGAGATTCTACGATTTGAATGCTGGTAAAATCAAAATTGACGGTGTC
AATATTGAGGATATGAAACGATCCGATGTGAGAAATCAATTTGACATGGTGCTCCAAGATGCTTGGTTGTTTGAAGATAC
GGTTAAAAACAATTTAATCTATAATCAAACCGGTGTAACGGACGAACAAATCAAAGAAGCCACCAAAGCTGTGGACTTAG
ATCATTTTATTGAAACTCTTCCTAAGGGCTATGATACGGTCTTAGATGATTCAGTTAGCCTATCGGTTGGACAAAAGCAG
CTATTGACTATTGCACGAGCTTTGATTAGAAATAAACCGATGTTGATATTGGATGAAGCAACTAGTTCGGTCGATACAAG
AACCGAAGAACAGATTCAAAAGGCTATGGATATTTTGATGAAGAATAGAACCTCCTTTGTAATTGCGCATAGATTATCTA
CAATCAAAAATGCCGATTTAATTCTGGTAGTTAAAGATGGTGAGATAATTGAACGAGGAACTCATGATGAATTGATGCAT
GAAAATGGTTTCTACGAAGAAATGTATAATAGTCAATTTCAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(355-502)

ABC transporter transmembrane region (ABC_membrane)

(18-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9HH64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.622

100

0.61

Multiple sequence alignment