Detailed information
Bioinformatically predicted
Overview
| Name | exbB | Type | Machinery gene |
| Locus tag | XF_RS04595 | Genome accession | NC_002488 |
| Coordinates | 1036377..1037039 (+) | Length | 220 a.a. |
| NCBI ID | WP_004085189.1 | Uniprot ID | Q9PEE9 |
| Organism | Xylella fastidiosa 9a5c | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1031377..1042039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XF_RS04580 (XF1076) | - | 1031610..1032851 (+) | 1242 | WP_010893595.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| XF_RS04585 (XF1077) | lolD | 1032844..1033566 (+) | 723 | WP_023906833.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| XF_RS04590 (XF1078) | comA | 1033915..1036392 (+) | 2478 | WP_031337969.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| XF_RS04595 (XF1079) | exbB | 1036377..1037039 (+) | 663 | WP_004085189.1 | MotA/TolQ/ExbB proton channel family protein | Machinery gene |
| XF_RS04600 (XF1080) | - | 1037044..1037481 (+) | 438 | WP_004089267.1 | ExbD/TolR family protein | - |
| XF_RS04605 (XF1081) | msbA | 1037499..1039247 (+) | 1749 | WP_031336930.1 | lipid A export permease/ATP-binding protein MsbA | - |
| XF_RS04610 (XF1082) | lpxK | 1039244..1040263 (+) | 1020 | WP_010893599.1 | tetraacyldisaccharide 4'-kinase | - |
| XF_RS04615 (XF1084) | - | 1040909..1041550 (+) | 642 | WP_010893601.1 | ParA family protein | - |
Sequence
Protein
Download Length: 220 a.a. Molecular weight: 24000.41 Da Isoelectric Point: 8.9727
>NTDB_id=21111 XF_RS04595 WP_004085189.1 1036377..1037039(+) (exbB) [Xylella fastidiosa 9a5c]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD
Nucleotide
Download Length: 663 bp
>NTDB_id=21111 XF_RS04595 WP_004085189.1 1036377..1037039(+) (exbB) [Xylella fastidiosa 9a5c]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTGTTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGCATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATCCCCGCTCTCATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGCTATGTGATTGAGATGGA
GCAAGAGGCAATGCTCCTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCATC
CCAATGCTGTCACCAAGGATTGA
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTGTTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGACGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGCATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATCCCCGCTCTCATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGCTATGTGATTGAGATGGA
GCAAGAGGCAATGCTCCTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCATC
CCAATGCTGTCACCAAGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| exbB | Pseudomonas stutzeri DSM 10701 |
48.744 |
90.455 |
0.441 |