Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   XF_RS04590 Genome accession   NC_002488
Coordinates   1033915..1036392 (+) Length   825 a.a.
NCBI ID   WP_031337969.1    Uniprot ID   -
Organism   Xylella fastidiosa 9a5c     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1028915..1041392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS04565 (XF1073) - 1030027..1030812 (+) 786 WP_010893592.1 succinate dehydrogenase iron-sulfur subunit -
  XF_RS04570 (XF1074) - 1030933..1031181 (+) 249 WP_023906835.1 succinate dehydrogenase assembly factor 2 -
  XF_RS04575 (XF1075) - 1031132..1031584 (+) 453 WP_229716575.1 hypothetical protein -
  XF_RS04580 (XF1076) - 1031610..1032851 (+) 1242 WP_010893595.1 lipoprotein-releasing ABC transporter permease subunit -
  XF_RS04585 (XF1077) lolD 1032844..1033566 (+) 723 WP_023906833.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  XF_RS04590 (XF1078) comA 1033915..1036392 (+) 2478 WP_031337969.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  XF_RS04595 (XF1079) exbB 1036377..1037039 (+) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  XF_RS04600 (XF1080) - 1037044..1037481 (+) 438 WP_004089267.1 ExbD/TolR family protein -
  XF_RS04605 (XF1081) msbA 1037499..1039247 (+) 1749 WP_031336930.1 lipid A export permease/ATP-binding protein MsbA -
  XF_RS04610 (XF1082) lpxK 1039244..1040263 (+) 1020 WP_010893599.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 825 a.a.        Molecular weight: 90732.61 Da        Isoelectric Point: 9.0670

>NTDB_id=21110 XF_RS04590 WP_031337969.1 1033915..1036392(+) (comA) [Xylella fastidiosa 9a5c]
MDDMKPEQRHVLQRCWVDVLSVTRHATCLRYLGFPALLPSAVALLLGCLAALTLPRLPPVWVLWIFLFAGVMLAVVVRRV
AWCGVVLFGFANCCLHGQFGLRHQLSFALEGRDLVLRGRIVSLPVPETRRTRFLLRVDTDQDQEPALRGRLLQLSWYDEN
KVVAPGPRNALHAGSVWQLHVRLRAPHSLLNPGGFDSERYALAQGIVATGYVRAPTMAREVAAATGINAWRERMSVRIAD
AVLSEASVYLRALALGDTRGLSQQDWEVLRATGLTHLIAISGFHVGMVAGACALLVSLLWRLFPHLAWRCPRPLAMALIA
VPAAAGYTVLAGASLPTVRTALMIGIVALARLTRRRAMPGHVLGLALLVVLVWDPLAILSAGFWLSFAGVAWLLWCMQDG
HAAPWRGFLSAQGVATLGLLPFTVALFGQVSFVGPFANLIAIPLWTFVVVPLALLGTALEALVPGWGSPMWRLGGTCFEW
SWQLFEYLAQTDFALWWLPESDGVALWLALLGAFWLLLPRGTPGKWLALLLWLPLLWPERERPRPGEFEMQMLDVGQGLS
IVVRTSGHTLLYDAGPAVNDGFDAGERVVVPALRASGIRRLDALVASHADSDHVGGLPAVLKAYPVDISYAPPDAPLDVE
RRCSAGDSWLWDGVQFRFLHPAPHSTYLGNESSCVLRIDTRWGSALLTGDIGKVVERGLLSQDRESVRADVVVVPHHGSA
GSSSLGFVRAVNARLALVSSGDGNRFGHPRCSVVESWSETADVLLTAHSGAVRIWVGQQGLQLRERRVWRRRFWDAVERR
RSAAILSATEDVSKERRRNETCWNW

Nucleotide


Download         Length: 2478 bp        

>NTDB_id=21110 XF_RS04590 WP_031337969.1 1033915..1036392(+) (comA) [Xylella fastidiosa 9a5c]
ATGGACGATATGAAACCCGAGCAGCGACACGTGTTGCAGCGATGTTGGGTTGACGTGTTAAGTGTGACCCGGCACGCAAC
CTGCTTGCGTTACCTCGGGTTTCCGGCGTTGTTGCCGAGTGCTGTTGCGTTGCTGTTGGGTTGTCTTGCTGCGCTCACCT
TGCCGCGATTACCGCCCGTATGGGTGTTGTGGATTTTTCTGTTTGCCGGAGTAATGCTCGCTGTTGTCGTGCGCCGTGTT
GCTTGGTGCGGTGTGGTGTTGTTTGGTTTTGCTAACTGTTGCTTGCATGGTCAGTTTGGTTTGCGACATCAATTGTCGTT
CGCGTTGGAGGGCCGCGATCTGGTGTTACGTGGTCGGATCGTTTCTTTGCCGGTTCCAGAGACCAGGCGCACACGTTTCT
TGTTGCGTGTGGATACCGATCAAGATCAGGAACCAGCGCTGCGTGGTCGACTGCTGCAGTTATCCTGGTATGACGAGAAT
AAGGTGGTAGCGCCGGGGCCACGCAATGCATTGCATGCTGGATCTGTATGGCAGTTGCACGTGCGTTTGCGTGCGCCGCA
CAGTTTGCTGAATCCCGGAGGTTTCGACAGCGAGCGTTATGCCCTAGCCCAGGGGATTGTTGCGACCGGTTACGTACGTG
CGCCGACGATGGCACGTGAGGTGGCGGCAGCCACTGGCATCAATGCTTGGCGGGAACGGATGTCTGTGCGTATTGCTGAT
GCGGTGTTGTCGGAAGCATCGGTGTATTTACGTGCGTTGGCGTTGGGTGATACCCGGGGCTTGTCCCAACAGGATTGGGA
AGTATTGCGCGCTACAGGGCTGACGCATTTGATTGCGATCTCGGGGTTCCATGTCGGTATGGTCGCTGGTGCCTGTGCGT
TGCTTGTGTCGTTGCTGTGGCGGCTTTTCCCACATTTGGCGTGGCGTTGTCCGCGACCACTCGCCATGGCACTCATTGCG
GTACCGGCCGCCGCCGGCTACACCGTCCTGGCTGGGGCGTCACTGCCCACAGTCAGAACCGCTTTGATGATCGGCATCGT
CGCATTGGCGCGCCTCACTCGGCGTCGTGCCATGCCGGGGCATGTCCTGGGGCTTGCCTTGCTGGTCGTACTGGTTTGGG
ATCCATTAGCCATTCTTAGTGCTGGCTTCTGGCTCAGCTTTGCCGGTGTCGCTTGGTTACTGTGGTGTATGCAAGACGGT
CATGCCGCGCCTTGGCGTGGCTTCTTATCGGCACAAGGTGTTGCAACCCTTGGGTTATTACCATTCACCGTGGCTTTATT
TGGTCAGGTTTCGTTTGTTGGGCCTTTCGCTAACTTGATTGCGATTCCGTTATGGACCTTTGTCGTTGTACCGCTGGCGT
TGTTAGGGACTGCGCTGGAAGCGTTAGTGCCAGGGTGGGGTAGCCCCATGTGGCGTTTGGGGGGAACTTGTTTCGAATGG
AGTTGGCAGCTATTCGAATACTTGGCACAGACTGATTTCGCATTGTGGTGGTTGCCGGAATCTGATGGTGTTGCATTGTG
GTTGGCCTTGCTGGGAGCGTTTTGGTTGCTGTTACCACGCGGTACGCCTGGTAAGTGGCTGGCGCTGTTGCTGTGGTTGC
CTTTGTTGTGGCCTGAGCGTGAGCGTCCCCGCCCCGGGGAGTTTGAGATGCAGATGCTGGACGTGGGGCAAGGACTGTCG
ATTGTGGTGCGTACCTCAGGCCATACGTTGTTGTACGACGCAGGTCCAGCAGTGAATGATGGTTTCGATGCCGGTGAGCG
TGTTGTGGTGCCGGCATTACGTGCCAGTGGCATCCGTCGCTTGGATGCATTGGTGGCTAGTCATGCTGATAGTGATCACG
TCGGAGGTTTGCCCGCGGTCCTGAAGGCTTATCCGGTTGATATCAGCTACGCTCCGCCGGATGCTCCACTCGACGTGGAG
CGCCGTTGCAGTGCTGGGGACAGTTGGCTGTGGGATGGAGTCCAGTTTCGTTTCTTACATCCTGCACCGCATTCGACGTA
TTTAGGTAACGAGTCCAGTTGTGTATTGCGTATCGACACGCGCTGGGGCAGTGCTTTGTTGACGGGTGACATCGGCAAAG
TGGTCGAACGTGGTTTATTGAGTCAGGATCGTGAGAGTGTACGTGCCGATGTGGTGGTCGTACCGCATCATGGGAGCGCC
GGTTCTTCCTCGCTTGGGTTTGTCCGTGCGGTTAATGCGCGGTTAGCTTTGGTATCCAGTGGTGATGGTAACCGCTTCGG
TCATCCGCGCTGTTCGGTGGTGGAGAGCTGGAGTGAAACGGCAGATGTGTTGCTTACTGCGCATAGCGGCGCAGTACGGA
TTTGGGTTGGACAGCAGGGTCTGCAGTTACGTGAACGCCGTGTTTGGCGTCGTCGATTCTGGGATGCGGTCGAACGTCGC
CGATCCGCTGCTATCCTATCCGCCACTGAAGATGTATCCAAAGAGCGTCGGAGAAACGAGACATGCTGGAACTGGTAA

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(58-216)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-722)

Competence protein (Competence)

(253-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

37.153

100

0.373

Multiple sequence alignment