Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BJD09_RS22565 Genome accession   NZ_CP018858
Coordinates   4980493..4981887 (-) Length   464 a.a.
NCBI ID   WP_015463522.1    Uniprot ID   A0A7S6YVA4
Organism   Xanthomonas citri pv. citri strain LH201     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4980103..5003681 4980493..4981887 within 0


Gene organization within MGE regions


Location: 4980103..5003681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD09_RS22560 (BJD09_22555) - 4980103..4980270 (+) 168 WP_015463523.1 hypothetical protein -
  BJD09_RS22565 (BJD09_22560) pilR 4980493..4981887 (-) 1395 WP_015463522.1 sigma-54 dependent transcriptional regulator Regulator
  BJD09_RS22570 (BJD09_22565) - 4982212..4983825 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  BJD09_RS22575 (BJD09_22570) sucC 4984057..4985226 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  BJD09_RS22580 (BJD09_22575) sucD 4985251..4986126 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  BJD09_RS22585 (BJD09_22580) - 4986213..4986728 (+) 516 WP_011052123.1 hypothetical protein -
  BJD09_RS22590 (BJD09_22585) - 4986683..4987798 (-) 1116 WP_011052122.1 IS1595 family transposase -
  BJD09_RS22595 (BJD09_22590) - 4988026..4988310 (-) 285 WP_016849322.1 hypothetical protein -
  BJD09_RS22605 (BJD09_22600) xopAI 4989640..4990530 (-) 891 WP_011052119.1 type III secretion system effector XopAI -
  BJD09_RS22610 (BJD09_22605) - 4990664..4991745 (-) 1082 Protein_4190 DNA-binding protein -
  BJD09_RS22615 (BJD09_22610) xopE 4992076..4993152 (-) 1077 WP_041470856.1 XopE/AvrPphe family type III secretion system effector -
  BJD09_RS22620 (BJD09_22615) - 4993285..4994340 (-) 1056 WP_011052969.1 DNA-binding protein -
  BJD09_RS22625 (BJD09_22620) - 4994532..4995806 (+) 1275 WP_011052968.1 tyrosine-type recombinase/integrase -
  BJD09_RS22630 (BJD09_22625) - 4995814..4998803 (+) 2990 Protein_4194 Tn3-like element TnXax1 family transposase -
  BJD09_RS22635 (BJD09_22630) - 4998936..5000213 (+) 1278 WP_011052115.1 lytic murein transglycosylase -
  BJD09_RS22640 (BJD09_22635) avrXacE2 5000299..5001369 (+) 1071 WP_011052114.1 type III secretion system effector avirulence protein AvrXacE2 -
  BJD09_RS22650 (BJD09_22645) - 5002129..5003296 (-) 1168 Protein_4197 IS3 family transposase -
  BJD09_RS22660 (BJD09_22655) - 5003334..5003681 (+) 348 WP_040107789.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50105.56 Da        Isoelectric Point: 6.6973

>NTDB_id=211054 BJD09_RS22565 WP_015463522.1 4980493..4981887(-) (pilR) [Xanthomonas citri pv. citri strain LH201]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELGNILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=211054 BJD09_RS22565 WP_015463522.1 4980493..4981887(-) (pilR) [Xanthomonas citri pv. citri strain LH201]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGGAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.851

99.784

0.627
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment