Detailed information NTG0210964

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: BUQ72_RS19660
• Genome accession: NZ_CP018845
• Coordinates: 4444250..4445419 (-)
• Length: 389 a.a.
• NCBI ID: WP_079218076.1
• Uniprot ID: -
• Organism: Herbaspirillum robiniae strain AA6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4439250..4450419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BUQ72_RS19630	cyoE	4439444..4440337 (+)	894	WP_079218070.1	heme o synthase	-
BUQ72_RS19635	-	4440342..4440935 (+)	594	WP_079218071.1	SCO family protein	-
BUQ72_RS19640	rpoH	4441059..4441958 (-)	900	WP_079218072.1	RNA polymerase sigma factor RpoH	-
BUQ72_RS19645	ftsX	4442332..4443255 (-)	924	WP_079218073.1	permease-like cell division protein FtsX	-
BUQ72_RS19650	-	4443252..4443944 (-)	693	WP_079218074.1	cell division ATP-binding protein FtsE	-
BUQ72_RS19655	-	4443978..4444247 (-)	270	WP_079218075.1	hypothetical protein	-
BUQ72_RS19660	pilA	4444250..4445419 (-)	1170	WP_079218076.1	signal recognition particle-docking protein FtsY	Machinery gene
BUQ72_RS19665	-	4445622..4446992 (+)	1371	WP_079218077.1	M16 family metallopeptidase	-
BUQ72_RS19670	-	4447063..4447698 (+)	636	WP_079218078.1	ParA family protein	-
BUQ72_RS19675	-	4447760..4449124 (+)	1365	WP_079218079.1	M16 family metallopeptidase	-
BUQ72_RS19680	rsmD	4449135..4449797 (+)	663	WP_079218080.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
BUQ72_RS19685	coaD	4449834..4450322 (+)	489	WP_079218081.1	pantetheine-phosphate adenylyltransferase	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 41067.24 Da
• Isoelectric Point: 5.4578

>NTDB_id=210964 BUQ72_RS19660 WP_079218076.1 4444250..4445419(-) (pilA) [Herbaspirillum robiniae strain AA6]
MFSFFKRKPKPEVQPELPPSLPPEAQPAASEPAAPAPATPPVEIAPPSAAVVSPPQPEAAHVAHATHAADEAVAPEPEPE
IVEAPAPTPEAKRSWLSRLKSGLSKTSSNLTTLFIGARIDDDLYEELESALLVSDAGVEATQWLLDELKKKVKAERLTEA
AQVRTALRSLLIDLLTPLQRPLVLGREQPLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWG
ERNNVSVIAQESGDPAAVAFDAVHSATARGTNVVMVDTAGRLPTQLHLMDELKKIKRVIAKGMATAPHEVLLVIDGNTGQ
NALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDLQPFNATEFVDALLS

Nucleotide

• Length: 1170 bp

>NTDB_id=210964 BUQ72_RS19660 WP_079218076.1 4444250..4445419(-) (pilA) [Herbaspirillum robiniae strain AA6]
ATGTTTAGTTTCTTCAAAAGAAAACCCAAGCCGGAAGTGCAGCCAGAACTGCCGCCGAGCCTGCCGCCAGAAGCGCAACC
GGCCGCCAGCGAACCTGCAGCGCCAGCCCCTGCCACGCCCCCTGTCGAGATCGCGCCGCCTTCCGCGGCGGTCGTGTCGC
CGCCTCAGCCCGAGGCCGCTCATGTCGCTCATGCCACTCATGCCGCCGACGAGGCCGTTGCGCCCGAGCCGGAGCCCGAG
ATCGTCGAAGCCCCCGCGCCGACGCCGGAAGCCAAGCGCTCCTGGCTGTCGCGCCTGAAGTCCGGGCTGTCCAAGACGTC
CAGCAACCTGACCACGCTGTTCATCGGCGCGCGCATCGACGACGACCTCTATGAGGAGCTGGAGTCGGCCCTGCTGGTGT
CCGACGCCGGCGTCGAGGCGACCCAGTGGCTGCTGGACGAACTGAAAAAGAAGGTCAAGGCCGAACGCCTGACCGAGGCC
GCCCAGGTGCGCACCGCCCTGCGCAGCCTGCTGATCGACCTGCTCACGCCGCTGCAGCGCCCGCTGGTGCTGGGCCGCGA
GCAGCCGCTGGTGATGATGATCGCCGGCGTCAACGGCGCCGGCAAGACCACCACCATCGGCAAGCTGGCGTTGCACCTGC
AGGCCCACGGCCAGTCGGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGCGGTCTGGGGC
GAACGCAACAACGTGTCGGTGATCGCGCAGGAGTCCGGCGACCCGGCCGCGGTCGCCTTCGACGCCGTGCATTCGGCCAC
CGCCCGCGGCACCAACGTGGTCATGGTGGACACGGCCGGCCGCCTGCCGACGCAACTGCACCTGATGGACGAGCTCAAGA
AGATCAAGCGCGTCATCGCCAAAGGCATGGCCACGGCGCCGCACGAGGTGCTGCTGGTCATCGACGGCAACACCGGCCAG
AACGCGCTGGCCCAGGTCAAGGCCTTCGACGACGCGCTGGGCCTGACCGGCCTGGTGGTGACCAAGCTGGACGGCACCGC
CAAGGGCGGCATCCTGGCCGCCATCGCCAAGACCCGCCCGGTGCCGCTGTATTTCATCGGCGTGGGCGAGAAGATCGAAG
ACCTGCAGCCCTTCAACGCCACCGAATTCGTCGACGCGCTGCTGTCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (110-169)

• SRP54-type protein, GTPase domain (SRP54) (190-388)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.506	100	0.566