Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   BUM85_RS07500 Genome accession   NZ_CP018842
Coordinates   1512203..1512778 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 14.1.R1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1507203..1517778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM85_RS07460 (BUM85_07455) - 1507667..1508605 (+) 939 WP_002475760.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  BUM85_RS07465 (BUM85_07470) - 1508959..1509516 (-) 558 WP_002458045.1 GNAT family N-acetyltransferase -
  BUM85_RS07475 (BUM85_07480) - 1509746..1509961 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  BUM85_RS13670 - 1510065..1510181 (+) 117 WP_353955890.1 SAR1012 family small protein -
  BUM85_RS07480 (BUM85_07485) - 1510503..1511033 (+) 531 WP_002475755.1 GNAT family N-acetyltransferase -
  BUM85_RS13610 (BUM85_07490) - 1511269..1511464 (+) 196 Protein_1403 hypothetical protein -
  BUM85_RS07500 (BUM85_07505) comK/comK1 1512203..1512778 (-) 576 WP_001829272.1 competence protein ComK Regulator
  BUM85_RS07510 (BUM85_07510) - 1512993..1513211 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  BUM85_RS07515 (BUM85_07515) - 1513289..1514275 (-) 987 WP_002446122.1 lipoate--protein ligase -
  BUM85_RS07520 (BUM85_07520) - 1514480..1514665 (+) 186 WP_001829339.1 YkvS family protein -
  BUM85_RS07525 (BUM85_07525) - 1514671..1515273 (+) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  BUM85_RS07530 (BUM85_07530) - 1515377..1516882 (-) 1506 WP_002458038.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=210938 BUM85_RS07500 WP_001829272.1 1512203..1512778(-) (comK/comK1) [Staphylococcus epidermidis strain 14.1.R1]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=210938 BUM85_RS07500 WP_001829272.1 1512203..1512778(-) (comK/comK1) [Staphylococcus epidermidis strain 14.1.R1]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment