Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Tchl_RS09070 Genome accession   NZ_CP018839
Coordinates   1949039..1950457 (+) Length   472 a.a.
NCBI ID   WP_075148119.1    Uniprot ID   -
Organism   Thauera chlorobenzoica strain 3CB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944039..1955457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tchl_RS09045 (Tchl_1810) - 1944970..1946127 (-) 1158 WP_075148115.1 pyridoxal phosphate-dependent aminotransferase -
  Tchl_RS09050 (Tchl_1811) - 1946231..1946539 (-) 309 WP_075148116.1 type II toxin-antitoxin system RelE/ParE family toxin -
  Tchl_RS09055 (Tchl_1812) - 1946542..1946826 (-) 285 WP_075149665.1 CopG family transcriptional regulator -
  Tchl_RS09060 (Tchl_1813) - 1947178..1947414 (+) 237 WP_075148117.1 PP0621 family protein -
  Tchl_RS09065 (Tchl_1814) - 1947423..1949042 (+) 1620 WP_075148118.1 PAS domain-containing sensor histidine kinase -
  Tchl_RS09070 (Tchl_1815) pilR 1949039..1950457 (+) 1419 WP_075148119.1 sigma-54 dependent transcriptional regulator Regulator
  Tchl_RS09075 (Tchl_1816) - 1950492..1951304 (-) 813 WP_232311555.1 N-acyl amino acid synthase FeeM domain-containing protein -
  Tchl_RS09080 (Tchl_1817) - 1951419..1952543 (-) 1125 WP_075148120.1 hypothetical protein -
  Tchl_RS09085 (Tchl_1818) - 1952652..1952972 (-) 321 WP_075148121.1 metal-sulfur cluster assembly factor -
  Tchl_RS09090 (Tchl_1819) argB 1953130..1954032 (+) 903 WP_075148122.1 acetylglutamate kinase -
  Tchl_RS09095 (Tchl_1820) - 1954091..1954342 (-) 252 WP_075148123.1 acyl carrier protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51997.55 Da        Isoelectric Point: 6.7271

>NTDB_id=210890 Tchl_RS09070 WP_075148119.1 1949039..1950457(+) (pilR) [Thauera chlorobenzoica strain 3CB1]
MNTVERRNRPRTVDVLVVDDEEDIRELLELSLLRMGLGCDTAGSLEEARALLDARRYRLCLTDMRLPDGDGLSLVEYIQA
RHAGLPVAVISAFGSIEAAIRALKLGAFDFVTKPVELKALRELVHHALSLRPEPAAAPAGDARMLVGDSPAFAQLRGQAE
KLARNQAPVFIYGESGTGKEVVARFIHRLGPRAAAPFVPVNCGAISPELMESEFFGYRKGSFTGAATDKEGLFQAARSGT
LFLDEIGELPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHQDLGRLVAEGRFRQDLFFRINVIALRVPPLRERR
EDIPALAAHILARLAEREGRAPRQLSVAALQVLLEHPFQGNVRELENLLERACALCEGERIEAADIELHPGASVSGWLTE
SAFGFNPTATWVAPARFERASGAEGREGEHAREQVRVVRVLEQARWNHDAAARSLGLSVAQLRYRLRQWGME

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=210890 Tchl_RS09070 WP_075148119.1 1949039..1950457(+) (pilR) [Thauera chlorobenzoica strain 3CB1]
ATGAACACCGTCGAACGCCGTAACCGCCCGCGCACCGTCGACGTCCTCGTCGTCGATGACGAGGAGGACATCCGCGAGCT
GCTCGAACTGTCCCTGCTGCGGATGGGCCTGGGCTGCGACACCGCGGGCTCGCTGGAGGAGGCGCGCGCCTTGCTCGATG
CGCGGCGCTATCGCCTGTGCCTGACCGACATGCGCCTGCCCGACGGCGACGGGCTGAGCCTGGTCGAATACATCCAGGCC
CGCCATGCCGGCCTGCCGGTGGCGGTGATCAGCGCCTTCGGCAGCATCGAAGCGGCGATCCGCGCGCTCAAGCTCGGTGC
CTTTGATTTCGTCACCAAACCGGTCGAACTCAAGGCCTTGCGCGAACTCGTGCACCATGCGCTGAGCCTGCGCCCCGAGC
CCGCGGCAGCGCCGGCCGGCGATGCGCGGATGCTGGTCGGCGACTCGCCCGCCTTCGCCCAGCTGCGCGGCCAGGCCGAG
AAGCTGGCGCGCAACCAGGCGCCGGTGTTCATCTACGGCGAGTCGGGCACCGGCAAGGAGGTGGTCGCCCGCTTCATCCA
CCGCCTCGGGCCGCGCGCGGCCGCGCCTTTCGTCCCGGTCAACTGCGGCGCGATCTCCCCGGAGCTGATGGAGAGCGAAT
TCTTCGGCTACCGCAAGGGCAGCTTCACCGGCGCCGCAACCGACAAGGAAGGCCTGTTCCAGGCCGCCCGCAGCGGCACG
CTGTTCCTCGATGAAATCGGCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGCGCGGTGCG
CCCGGTGGGCGCGCATGCCGAGGAGCCGGTCGATGTCCGCATCCTCTCCGCCTCGCACCAGGACCTCGGACGGCTGGTGG
CCGAGGGGCGCTTCCGCCAGGACCTGTTCTTCCGCATCAACGTCATCGCCCTGCGCGTGCCGCCGCTGCGCGAACGGCGC
GAGGATATTCCCGCGCTGGCAGCGCACATCCTTGCCCGCCTCGCCGAGCGCGAGGGGCGCGCGCCGCGGCAACTGTCCGT
GGCGGCGCTCCAGGTGCTGCTCGAGCACCCTTTCCAGGGCAATGTGCGCGAGCTGGAAAACCTGCTCGAGCGCGCCTGTG
CGCTGTGCGAGGGCGAGCGCATCGAGGCCGCCGACATCGAGCTCCATCCGGGGGCGAGCGTGTCGGGCTGGCTCACCGAG
AGCGCTTTCGGCTTCAATCCGACGGCCACCTGGGTTGCGCCGGCGCGCTTCGAGCGCGCCTCCGGGGCCGAGGGACGGGA
AGGGGAGCACGCCCGGGAGCAGGTGCGCGTGGTCCGTGTCCTCGAGCAGGCGCGCTGGAACCATGACGCCGCGGCGCGCA
GCCTCGGCCTCAGCGTCGCCCAGCTGCGCTACCGCCTGCGCCAGTGGGGGATGGAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(433-469)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Response regulator receiver domain (Response_reg)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.803

98.093

0.557
  pilR Acinetobacter baumannii strain A118

46.652

98.093

0.458

Multiple sequence alignment