Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BSQ33_RS13890 Genome accession   NZ_CP018835
Coordinates   3036671..3038071 (+) Length   466 a.a.
NCBI ID   WP_021019492.1    Uniprot ID   A0A1Z2SHM2
Organism   Vibrio gazogenes strain ATCC 43942     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031671..3043071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS13875 (BSQ33_13920) - 3032506..3033333 (+) 828 WP_021019489.1 DUF5718 family protein -
  BSQ33_RS13885 (BSQ33_13930) uvrB 3034367..3036397 (+) 2031 WP_021019491.1 excinuclease ABC subunit UvrB -
  BSQ33_RS13890 (BSQ33_13935) luxO 3036671..3038071 (+) 1401 WP_021019492.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BSQ33_RS13895 (BSQ33_13940) luxU 3038086..3038424 (+) 339 WP_420070613.1 quorum-sensing phosphorelay protein LuxU -
  BSQ33_RS13900 (BSQ33_13945) yvcK 3038477..3039397 (-) 921 WP_088134328.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  BSQ33_RS13905 (BSQ33_13950) moaA 3039703..3040686 (+) 984 WP_088134329.1 GTP 3',8-cyclase MoaA -
  BSQ33_RS13910 (BSQ33_13955) moaB 3040847..3041353 (+) 507 WP_021019496.1 molybdenum cofactor biosynthesis protein B -
  BSQ33_RS13915 (BSQ33_13960) moaC 3041372..3041851 (+) 480 WP_021019497.1 cyclic pyranopterin monophosphate synthase MoaC -
  BSQ33_RS13920 (BSQ33_13965) moaD 3041848..3042093 (+) 246 WP_021019498.1 molybdopterin synthase sulfur carrier subunit -
  BSQ33_RS13925 (BSQ33_13970) moaE 3042095..3042547 (+) 453 WP_021019499.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52516.18 Da        Isoelectric Point: 5.3047

>NTDB_id=210787 BSQ33_RS13890 WP_021019492.1 3036671..3038071(+) (luxO) [Vibrio gazogenes strain ATCC 43942]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLNIDINIVGTGKEALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNHGKEITLSMLPPPLNQPKESYL
RLVQPMMEERKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNAEEKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=210787 BSQ33_RS13890 WP_021019492.1 3036671..3038071(+) (luxO) [Vibrio gazogenes strain ATCC 43942]
ATGCAATCTGAACAGTTACCACAAAAAAGTAGATATCTACTGATGGTTGAAGATACAGCGTCTGTTGCTGTGCTGTATCG
AACCTATCTTGAGCCTCTGAATATTGACATCAATATTGTCGGTACGGGGAAAGAGGCGTTAGAGAGTCTTGAAAAAAGAG
AACCCGATCTGATTCTGCTTGATTTACGGCTTCCGGATATGACAGGGATGGACGTCTTACATGAGGTGAAACGGAAATAC
CCGGATGTCCCCGTCATTTTCATGACGGCTCATGGCTCAATTGATACGGCTGTTGAAGCCATGCGCTACGGTGCTCAGGA
TTTTCTCATTAAACCATGCGAAGCTGACCGATTACGCGTTACAGTCAATAATGCGATTCGTAAAGCTTCAAAAATTAAGA
GTGATTCCGATGATCCGCGCAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACTATGCAGGCCGTGTATCGAACG
ATTGACTCTGCGGCAGCGAGTAAGGCCAGTATCTTTATCACTGGAGAAAGTGGCACCGGGAAAGAAGTATGTGCTGAAGC
CATTCATGCTGCAAGTCGGCGAGGTGATAAACCTTTTATTGCGATTAACTGTGCAGCCATTCCGAAAGATTTAATTGAGA
GTGAACTGTTCGGTCACGTGAAAGGGGCTTTTACAGGGGCAGCAACGGATCGACAAGGCGCTGCGGAGCTCGCTGATGGC
GGAACGCTATTTCTGGATGAGCTCTGTGAGATGGATTTGGACTTACAGACGAAGCTGTTGCGGTTTATCCAAACCGGTAC
ATTCCAGAAAGTCGGTTCATCAAAAATGAAAAGTGTTGATGTTCGCTTTGTGTGTGCGACAAACCGTGACCCGTGGAAAG
AGGTTCAGGAGGGTCGTTTCCGGGAAGATTTATATTATCGTTTATATGTCATCCCGCTTCACCTGCCGCCCCTTCGGGAG
CGTGGTGATGATGTCATCGAAATCGCATATTCTTTGCTCGGTTATATGTCCAAAGAAGAAGAGAAAGATTTTGTTCGCCT
TGCCGCTGAAGTCGTGGAACGTTTTAGACAGTACGAATGGCCGGGCAATGTTCGTCAATTGCAGAATGTTTTACGTAATG
TTGTGGTACTGAATCATGGCAAAGAAATTACGCTGAGTATGTTACCACCGCCATTGAATCAACCGAAAGAAAGTTATCTT
CGTTTGGTTCAACCGATGATGGAAGAGAGGAAACCTTCAGTCCATGAGATATTTCCGCTCTGGATGACTGAAAAAATGGC
AATCGAAAATGCCATTGATGCCTGTGAAGGAAATATTCCGAAAGCCGCAGGTTATCTGGAAGTGAGTCCTTCAACCATCT
ACCGTAAGTTACAGTCTTGGAATGCAGAAGAGAAAGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z2SHM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.248

95.923

0.837
  pilR Acinetobacter baumannii strain A118

35.897

100

0.361

Multiple sequence alignment