Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Cj1205c Genome accession   NC_002163
Coordinates   1134109..1135449 (-) Length   446 a.a.
NCBI ID   YP_002344596.1    Uniprot ID   Q9PN90
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1129109..1140449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj1200 - 1129228..1130016 (+) 789 YP_002344591.1 NLPA family lipoprotein -
  Cj1201 metE 1130028..1132292 (+) 2265 YP_002344592.1 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase -
  Cj1202 metF 1132302..1133150 (+) 849 YP_002344593.1 methylenetetrahydrofolate reductase -
  Cj1203c - 1133172..1133363 (-) 192 YP_002344594.1 integral membrane protein -
  Cj1204c atpB 1133360..1134040 (-) 681 YP_002344595.1 ATP synthase subunit A -
  Cj1205c radA 1134109..1135449 (-) 1341 YP_002344596.1 DNA repair protein RadA Machinery gene
  Cj1206c pilA 1135449..1136315 (-) 867 YP_002344597.1 signal recognition particle protein Machinery gene
  Cj1207c - 1136315..1136872 (-) 558 YP_002344598.1 lipoprotein thiredoxin -
  Cj1208 - 1136955..1137581 (+) 627 YP_002344599.1 5-formyltetrahydrofolate cyclo-ligase -
  Cj1209 - 1137502..1139055 (+) 1554 YP_002344600.1 ribonuclease Y -
  Cj1210 - 1139064..1139621 (+) 558 YP_002344601.1 integral membrane protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49024.91 Da        Isoelectric Point: 6.9288

>NTDB_id=21078 Cj1205c YP_002344596.1 1134109..1135449(-) (radA) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=21078 Cj1205c YP_002344596.1 1134109..1135449(-) (radA) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGCATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAGCATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAGCTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAGGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTAATGGAGGGATCTCGTGCTTTGGTTTTAGAAGTTCAAGCTTTGGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACGGGCTATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAGCTTGAAATTCCTTTGGGGCA
TTATGATGTATTTGTAAATATTAGTGGCGGAGTAAAAGTAAGCGAAACTGCGGCGGATTTGGCTGTGGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.897

97.534

0.457
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457

Multiple sequence alignment