Detailed information NTG0210692

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: CR542_RS10325
• Genome accession: NZ_CP024126
• Coordinates: 2013371..2014465 (-)
• Length: 364 a.a.
• NCBI ID: WP_002936177.1
• Uniprot ID: -
• Organism: Streptococcus suis strain HA0609
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2008371..2019465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CR542_RS10310 (CR542_10270)	-	2008885..2009244 (+)	360	WP_013730591.1	bacteriocin transporter	-
CR542_RS10315 (CR542_10275)	-	2009316..2011184 (-)	1869	WP_013730592.1	Ig-like domain-containing protein	-
CR542_RS10320 (CR542_10280)	-	2011729..2012931 (+)	1203	WP_009909264.1	IS110-like element ISSsu7 family transposase	-
CR542_RS10325 (CR542_10285)	recF	2013371..2014465 (-)	1095	WP_002936177.1	DNA replication/repair protein RecF	Machinery gene
CR542_RS10330 (CR542_10290)	yaaA	2014468..2014851 (-)	384	WP_002936175.1	S4 domain-containing protein YaaA	-
CR542_RS10335 (CR542_10295)	-	2014989..2016161 (-)	1173	WP_013730693.1	tyrosine-type recombinase/integrase	-
CR542_RS10340 (CR542_10300)	-	2016326..2017156 (-)	831	WP_013730692.1	KilA-N domain-containing protein	-
CR542_RS10345 (CR542_10305)	-	2017520..2018233 (-)	714	WP_013730691.1	helix-turn-helix domain-containing protein	-
CR542_RS10350 (CR542_10310)	-	2018387..2018614 (+)	228	WP_013730690.1	helix-turn-helix domain-containing protein	-
CR542_RS10355 (CR542_10315)	-	2018633..2019379 (+)	747	WP_013730689.1	Bro-N domain-containing protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42217.34 Da
• Isoelectric Point: 7.2235

>NTDB_id=210692 CR542_RS10325 WP_002936177.1 2013371..2014465(-) (recF) [Streptococcus suis strain HA0609]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=210692 CR542_RS10325 WP_002936177.1 2013371..2014465(-) (recF) [Streptococcus suis strain HA0609]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	99.176	0.695
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442