Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPYLPMSS1_RS07240 | Genome accession | NZ_CP018823 |
| Coordinates | 1470953..1471528 (-) | Length | 191 a.a. |
| NCBI ID | WP_077232506.1 | Uniprot ID | - |
| Organism | Helicobacter pylori PMSS1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1465953..1476528
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPYLPMSS1_RS07230 (HPYLPMSS1_01397) | - | 1468264..1468854 (-) | 591 | Protein_1367 | restriction endonuclease subunit S | - |
| HPYLPMSS1_RS07235 (HPYLPMSS1_01398) | - | 1468884..1470920 (-) | 2037 | WP_077232505.1 | VRR-NUC domain-containing protein | - |
| HPYLPMSS1_RS07240 (HPYLPMSS1_01399) | comFC | 1470953..1471528 (-) | 576 | WP_077232506.1 | ComF family protein | Machinery gene |
| HPYLPMSS1_RS07245 (HPYLPMSS1_01400) | tmk | 1471516..1472091 (-) | 576 | WP_077232507.1 | dTMP kinase | - |
| HPYLPMSS1_RS07250 (HPYLPMSS1_01401) | coaD | 1472093..1472566 (-) | 474 | WP_077232508.1 | pantetheine-phosphate adenylyltransferase | - |
| HPYLPMSS1_RS07255 (HPYLPMSS1_01402) | - | 1472566..1473129 (-) | 564 | WP_000780109.1 | UbiX family flavin prenyltransferase | - |
| HPYLPMSS1_RS07260 (HPYLPMSS1_01403) | flgA | 1473139..1473795 (-) | 657 | WP_077232509.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPYLPMSS1_RS07265 (HPYLPMSS1_01404) | uvrD | 1473792..1475837 (-) | 2046 | WP_173668921.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21308.83 Da Isoelectric Point: 8.6728
>NTDB_id=210685 HPYLPMSS1_RS07240 WP_077232506.1 1470953..1471528(-) (comFC) [Helicobacter pylori PMSS1]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=210685 HPYLPMSS1_RS07240 WP_077232506.1 1470953..1471528(-) (comFC) [Helicobacter pylori PMSS1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
CTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAGAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAGGGT
CTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.906 |
100 |
0.979 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |