Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   Cj0635 Genome accession   NC_002163
Coordinates   597416..597799 (+) Length   127 a.a.
NCBI ID   YP_002344064.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592416..602799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cj0631c - 592495..594429 (-) 1935 YP_002344060.1 ribonuclease -
  Cj0632 ilvC 594548..595570 (+) 1023 YP_002344061.1 ketol-acid reductoisomerase -
  Cj0633 - 595574..596656 (+) 1083 YP_002344062.1 periplasmic protein -
  Cj0634 dprA 596646..597419 (+) 774 YP_002344063.1 DNA processing protein A Machinery gene
  Cj0635 dprB 597416..597799 (+) 384 YP_002344064.1 Holliday junction resolvase-like protein Machinery gene
  Cj0636 - 597828..598667 (+) 840 YP_002344065.1 NOL1/NOP2/sun family protein -
  Cj0637c mrsA 598843..599340 (-) 498 YP_002344066.1 methionine sulfoxide reductase A -
  Cj0638c ppa 599381..599899 (-) 519 YP_002344067.1 inorganic pyrophosphatase -
  Cj0639c adk 599909..600487 (-) 579 YP_002344068.1 adenylate kinase -
  Cj0640c aspS 600484..602235 (-) 1752 YP_002344069.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=21066 Cj0635 YP_002344064.1 597416..597799(+) (dprB) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=21066 Cj0635 YP_002344064.1 597416..597799(+) (dprB) [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449