Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   BTR42_RS02195 Genome accession   NZ_CP018822
Coordinates   391092..392138 (+) Length   348 a.a.
NCBI ID   WP_009853406.1    Uniprot ID   A0A060RH60
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 386092..397138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS02180 (BTR42_01900) - 387358..389013 (+) 1656 WP_077496206.1 peptide ABC transporter substrate-binding protein -
  BTR42_RS02185 (BTR42_01905) - 389124..390038 (+) 915 WP_009853404.1 ABC transporter permease -
  BTR42_RS02190 (BTR42_01910) - 390049..391080 (+) 1032 WP_009853405.1 ABC transporter permease -
  BTR42_RS02195 (BTR42_01915) oppD 391092..392138 (+) 1047 WP_009853406.1 ABC transporter ATP-binding protein Regulator
  BTR42_RS02200 (BTR42_01920) amiF 392138..393067 (+) 930 WP_077496208.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38637.24 Da        Isoelectric Point: 4.8139

>NTDB_id=210615 BTR42_RS02195 WP_009853406.1 391092..392138(+) (oppD) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKEGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=210615 BTR42_RS02195 WP_009853406.1 391092..392138(+) (oppD) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAGAAGGTGAAACGCTTGCCATTGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTCAAAGGTAAAAAATTAACAGAATTA
AAAGAAGACGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGATCCAAC
AATGAAAATTGGTCAACAAATTGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAACAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTCGGTATTCCAAATGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCGATTGCCTTGGCAGCAAACCCAGATATTTTGATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACCATTCAAGCACAAATTTTGAATTTGATGAAACAAATTCAAAAAGAACGTGGTTCATCAATCGTCTTTATCACAC
ATGACCTTGGTGTTGTTGCGGGTATGGCTGATCGTGTTGCTGTTATGTATGCTGGTAAGATTATTGAATATGGAACAGTA
GATGAAGTATTCTATAACCCACAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACTGATACTGAAGCAGG
AAGCCTTCAATCTATCCCAGGGACACCGCCAGATCTCCTTAATCCACCAAAAGGTGATGCTTTTGCACCACGTAACGAGT
TTGCTTTAGATATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.403

99.713

0.802
  amiE Streptococcus salivarius strain HSISS4

59.172

97.126

0.575
  amiE Streptococcus thermophilus LMG 18311

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMD-9

58.876

97.126

0.572

Multiple sequence alignment