Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AYP_RS15820 Genome accession   NZ_CP024124
Coordinates   3269186..3269548 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain AYP-A2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3264186..3274548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYP_RS15810 (AYP_003137) - 3266464..3268542 (-) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -
  AYP_RS15815 (AYP_003138) - 3268589..3269125 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  AYP_RS15820 (AYP_003139) pilH 3269186..3269548 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  AYP_RS15825 (AYP_003140) pilG 3269572..3269955 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  AYP_RS15830 (AYP_003141) - 3270238..3270774 (+) 537 Protein_3057 hypothetical protein -
  AYP_RS15835 - 3270814..3271904 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  AYP_RS15845 (AYP_003145) - 3272125..3273243 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=210581 AYP_RS15820 WP_000101096.1 3269186..3269548(-) (pilH) [Acinetobacter baumannii strain AYP-A2]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=210581 AYP_RS15820 WP_000101096.1 3269186..3269548(-) (pilH) [Acinetobacter baumannii strain AYP-A2]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment