Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BUE77_RS00780 Genome accession   NZ_CP018809
Coordinates   153703..154218 (-) Length   171 a.a.
NCBI ID   WP_006585376.1    Uniprot ID   -
Organism   Lactobacillus jensenii strain SNUV360     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 148703..159218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUE77_RS00760 (BUE77_00760) dnaB 149437..150804 (-) 1368 WP_075362417.1 replicative DNA helicase -
  BUE77_RS00765 (BUE77_00765) rplI 150820..151272 (-) 453 WP_006588194.1 50S ribosomal protein L9 -
  BUE77_RS00770 (BUE77_00770) - 151292..153310 (-) 2019 WP_006588193.1 DHH family phosphoesterase -
  BUE77_RS00775 (BUE77_00775) rpsR 153443..153679 (-) 237 WP_006585377.1 30S ribosomal protein S18 -
  BUE77_RS00780 (BUE77_00780) ssb 153703..154218 (-) 516 WP_006585376.1 single-stranded DNA-binding protein Machinery gene
  BUE77_RS00785 (BUE77_00785) rpsF 154255..154548 (-) 294 WP_006585375.1 30S ribosomal protein S6 -
  BUE77_RS00790 (BUE77_00790) gyrA 154754..157231 (-) 2478 WP_006585374.1 DNA gyrase subunit A -
  BUE77_RS00795 (BUE77_00795) gyrB 157243..159198 (-) 1956 WP_006585373.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.38 Da        Isoelectric Point: 4.7213

>NTDB_id=210516 BUE77_RS00780 WP_006585376.1 153703..154218(-) (ssb) [Lactobacillus jensenii strain SNUV360]
MINRVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYANAQGERGADFINCVIWRKAAENFCNFTNKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVIVDNFSLLESRKDREARSQNSGYAPQNNGSSYAGNSNQNTNFQPNNSAPNTNNAAPQDPFADSGS
TIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=210516 BUE77_RS00780 WP_006585376.1 153703..154218(-) (ssb) [Lactobacillus jensenii strain SNUV360]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGCACTACTGGTAGTGGGATTAGCGTTGC
TACCTTTACATTAGCTGTTGATCGTCAATATGCTAATGCACAAGGTGAACGCGGAGCTGATTTTATTAACTGTGTAATCT
GGAGAAAGGCTGCAGAAAATTTCTGTAACTTTACTAATAAAGGTTCATTAGTTGGTATTGATGGCCGCATCCAAACCAGA
AGCTACGATAATAAGGATGGGCAAAGAGTTTATGTGACTGAAGTTATTGTTGATAATTTCTCACTACTTGAATCACGTAA
AGATCGTGAAGCTCGTTCCCAAAATAGTGGCTATGCGCCACAAAATAACGGAAGTTCATACGCTGGAAATAGTAATCAAA
ATACTAATTTCCAACCAAATAATAGTGCTCCAAATACCAATAATGCTGCACCACAGGATCCATTTGCTGATTCAGGTTCA
ACAATTGATATTTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.318

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.179

100

0.538

Multiple sequence alignment