Detailed information NTG0210443

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: FORC73_RS13570
• Genome accession: NZ_CP024082
• Coordinates: 2891400..2892074 (-)
• Length: 224 a.a.
• NCBI ID: WP_000053459.1
• Uniprot ID: A0AAU8WKI7
• Organism: Vibrio cholerae strain FORC_073
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2886400..2897074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC73_RS13535 (FORC73_2536)	-	2886581..2887360 (+)	780	WP_119783380.1	glycosyltransferase family 2 protein	-
FORC73_RS13540 (FORC73_2537)	-	2887421..2888458 (-)	1038	WP_119783381.1	glycosyltransferase family 9 protein	-
FORC73_RS13545 (FORC73_2538)	coaD	2888569..2889063 (+)	495	WP_000078890.1	pantetheine-phosphate adenylyltransferase	-
FORC73_RS13550 (FORC73_2539)	mutM	2889160..2889969 (-)	810	WP_119783382.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FORC73_RS13555 (FORC73_2540)	-	2889979..2890461 (-)	483	WP_162923425.1	hypothetical protein	-
FORC73_RS13560 (FORC73_2541)	rpmG	2890688..2890855 (-)	168	WP_001051801.1	50S ribosomal protein L33	-
FORC73_RS13565 (FORC73_2542)	rpmB	2890869..2891105 (-)	237	WP_000091952.1	50S ribosomal protein L28	-
FORC73_RS13570 (FORC73_2543)	radC	2891400..2892074 (-)	675	WP_000053459.1	DNA repair protein RadC	Machinery gene
FORC73_RS13575 (FORC73_2544)	-	2892186..2893865 (-)	1680	WP_033933058.1	methyl-accepting chemotaxis protein	-
FORC73_RS13580 (FORC73_2545)	coaBC	2894048..2895247 (+)	1200	WP_119783384.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FORC73_RS13585	-	2895313..2895450 (-)	138	WP_001889830.1	hypothetical protein	-
FORC73_RS13590 (FORC73_2546)	slmA	2895406..2895996 (+)	591	WP_000918350.1	nucleoid occlusion factor SlmA	-
FORC73_RS13595 (FORC73_2547)	-	2896002..2896949 (+)	948	WP_000076198.1	Kdo(2)-lipid IV(A) acyltransferase	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25256.06 Da
• Isoelectric Point: 7.5163

>NTDB_id=210443 FORC73_RS13570 WP_000053459.1 2891400..2892074(-) (radC) [Vibrio cholerae strain FORC_073]
MSLKELPTESMPREKLLQRGPQSLSDAELLAIFLRTGTHGMNVLALADLLLRDFGSLRALFCASKEQFCRHKGLGEAKFV
QLQAVLEMTQRYLAETLKRGDALTSPQQTKLYLSSVLRDRQREAFYILFLDNQHRVIRDEILFEGTIDAASVYPREVVKR
ALHHNAAAVILAHNHPSGVAEPSQADRRITDRLRDALGLVEIRVLDHFVVGDGEVVSFAERGWI

Nucleotide

• Length: 675 bp

>NTDB_id=210443 FORC73_RS13570 WP_000053459.1 2891400..2892074(-) (radC) [Vibrio cholerae strain FORC_073]
ATGAGTCTGAAAGAGTTACCCACCGAATCGATGCCGCGCGAAAAATTGCTGCAACGCGGCCCGCAATCATTAAGTGATGC
GGAATTGCTGGCGATTTTCCTACGTACAGGCACACATGGTATGAATGTACTCGCCTTGGCGGATCTGCTGCTGCGCGATT
TTGGATCACTGCGCGCACTGTTCTGTGCCTCCAAGGAGCAGTTTTGTCGCCACAAAGGGTTGGGCGAAGCCAAATTTGTC
CAGTTACAAGCGGTATTAGAGATGACGCAGCGTTATCTCGCTGAAACCTTAAAGCGCGGTGATGCCCTCACCAGTCCGCA
GCAAACCAAACTTTATTTATCGAGCGTTTTGCGCGATCGCCAACGAGAAGCCTTCTATATATTGTTTTTGGATAACCAAC
ATCGTGTCATTCGTGATGAGATTTTATTTGAAGGGACGATTGATGCGGCGAGCGTTTACCCACGAGAAGTGGTTAAGCGG
GCGCTGCACCATAATGCCGCTGCGGTAATACTGGCACACAACCACCCATCGGGTGTTGCGGAACCGAGTCAAGCCGATCG
AAGGATCACCGATCGCCTGCGTGATGCACTCGGTTTGGTTGAGATTCGTGTGCTGGATCATTTTGTCGTCGGTGATGGGG
AAGTGGTCTCTTTTGCTGAACGTGGCTGGATATAG

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (4-79)

• RadC-like JAB domain (RadC) (104-222)

3D structure

• AlphaFold DB: A0AAU8WKI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	53.704	96.429	0.518
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	37.946	100	0.379