Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FORC73_RS10175 Genome accession   NZ_CP024082
Coordinates   2181080..2182744 (+) Length   554 a.a.
NCBI ID   WP_119783259.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176080..2187744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS10160 (FORC73_1920) dnaK 2177147..2179054 (-) 1908 WP_033929515.1 molecular chaperone DnaK -
  FORC73_RS19340 - 2179212..2179325 (+) 114 WP_170832338.1 transporter -
  FORC73_RS10165 (FORC73_1921) grpE 2179318..2179920 (-) 603 WP_000064037.1 nucleotide exchange factor GrpE -
  FORC73_RS10170 (FORC73_1922) nadK 2180066..2180950 (+) 885 WP_000742830.1 NAD(+) kinase -
  FORC73_RS10175 (FORC73_1923) recN 2181080..2182744 (+) 1665 WP_119783259.1 DNA repair protein RecN Machinery gene
  FORC73_RS10180 (FORC73_1924) bamE 2182915..2183274 (+) 360 WP_001160909.1 outer membrane protein assembly factor BamE -
  FORC73_RS10185 (FORC73_1925) - 2183354..2183659 (-) 306 WP_001918351.1 RnfH family protein -
  FORC73_RS10190 (FORC73_1926) - 2183662..2184096 (-) 435 WP_000815880.1 SRPBCC family protein -
  FORC73_RS10195 (FORC73_1927) smpB 2184280..2184765 (+) 486 WP_000162689.1 SsrA-binding protein SmpB -
  FORC73_RS10205 (FORC73_1928) - 2185367..2186605 (+) 1239 WP_119783260.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 554 a.a.        Molecular weight: 61303.02 Da        Isoelectric Point: 5.6762

>NTDB_id=210419 FORC73_RS10175 WP_119783259.1 2181080..2182744(+) (recN) [Vibrio cholerae strain FORC_073]
MLAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRAEASMVRQGEDKTEVSAAFHLDNNLLASRWL
EDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQLKTLGQLLINVHGQHAHQQLMKPEYQLSMLDQYAGHADLLKTTR
HAYQNWRQASNQLKQLRENSQQNQAQLQLLEYQIKELNELALGEDEFVELEQEHKRLANSGDLALNCQRAIELLNEGEEV
NALGLLQSVSHTLIDLAEMDSKLTALPSMVAEALIQLEETYHELRNYLDSIDVDPERMAYVEERYSKVMSLARKHHVLPE
ELYQHHQALLQQIAQLDCSDEKMSALANEVDVLYQTFVAAADKLHKSRVRYAKELDKLISQSMHELSMEKAQFKIEVLQD
SAHSSPLGFDAVTFLVSTNPGQPLQPIAKVASGGELSRMSLAIQVITAQKVDTPSLIFDEVDVGISGPTAAVVGKLLRKL
GESTQVLCVTHLPQVAGCGHHQLFVAKQTKAGKTETQMLKLDQEQRIAELARLLGGSQITESTLANAKELLIAA

Nucleotide


Download         Length: 1665 bp        

>NTDB_id=210419 FORC73_RS10175 WP_119783259.1 2181080..2182744(+) (recN) [Vibrio cholerae strain FORC_073]
ATGCTGGCTCACTTAAGTATCAATAACTTCGCTATCGTAAAGTCATTACAACTCGAATTATCAAAAGGAATGACCACCAT
CACCGGCGAAACCGGTGCCGGTAAATCCATTGCGATTGATGCTTTAGGTTTATGCCTTGGTGGTCGAGCCGAAGCCAGCA
TGGTGCGTCAAGGTGAAGATAAAACCGAAGTCAGCGCTGCCTTTCATCTGGATAACAATCTGCTCGCTAGCCGTTGGTTA
GAAGATAATGAACTGCTTGAAGGCAAAGAGTGCATTCTGCGCCGAATCATCACCAAAGATGGGCGCTCTAAAGCCTTTAT
TAATGGCAGCCCAGTTCCGCTCTCTCAACTCAAAACATTGGGGCAACTGCTGATCAATGTGCATGGTCAACACGCACATC
AGCAACTGATGAAACCGGAATATCAACTCAGCATGCTTGATCAATACGCAGGTCATGCCGACTTGCTCAAAACCACGCGT
CACGCCTATCAAAATTGGCGTCAAGCGAGCAATCAGCTCAAACAGCTGCGCGAAAATAGCCAACAAAATCAGGCACAATT
ACAACTTTTGGAATACCAAATCAAAGAGCTCAACGAATTGGCTCTCGGTGAGGATGAGTTTGTCGAACTAGAACAAGAGC
ATAAACGTTTAGCCAATAGCGGCGATCTGGCACTCAACTGCCAACGCGCGATTGAACTGCTCAATGAAGGGGAAGAAGTC
AACGCCTTAGGCCTTTTACAAAGTGTTAGCCATACGCTGATTGATCTGGCTGAAATGGATAGCAAGCTGACAGCGCTCCC
TTCTATGGTGGCCGAAGCGCTGATCCAACTTGAAGAGACTTACCATGAACTGCGCAACTACTTGGATTCGATTGATGTCG
ACCCAGAACGCATGGCGTATGTAGAAGAGCGCTACTCCAAAGTCATGTCGCTCGCGCGTAAACATCATGTACTGCCAGAA
GAGCTGTATCAGCATCACCAAGCACTCTTGCAGCAAATTGCTCAGCTAGATTGTTCTGACGAGAAAATGTCAGCACTCGC
GAATGAAGTCGACGTGCTCTACCAAACCTTTGTTGCGGCCGCTGACAAACTGCACAAATCTCGTGTTCGCTATGCCAAAG
AATTGGATAAATTGATTAGCCAAAGCATGCATGAGCTGAGCATGGAAAAAGCGCAATTCAAAATCGAAGTGCTGCAAGAC
AGCGCGCACTCATCGCCATTAGGTTTTGATGCCGTGACTTTCTTAGTCTCGACGAACCCGGGTCAACCGCTGCAACCCAT
CGCCAAAGTGGCCTCTGGTGGTGAACTGTCACGGATGTCATTGGCGATCCAAGTGATTACTGCGCAGAAAGTCGATACTC
CAAGCCTGATTTTTGATGAAGTTGACGTGGGTATTTCAGGGCCAACAGCAGCCGTAGTTGGCAAACTACTGCGCAAATTG
GGCGAGTCAACCCAAGTACTGTGTGTCACCCACTTACCGCAAGTGGCAGGTTGCGGACACCATCAACTGTTTGTCGCCAA
ACAGACCAAAGCAGGCAAAACCGAAACGCAAATGCTCAAACTGGATCAAGAACAGCGCATTGCTGAACTTGCACGCTTGC
TCGGAGGCAGCCAAATTACCGAATCCACGCTCGCGAATGCTAAAGAGCTATTAATCGCAGCCTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.478

100

0.381
  recN Bacillus subtilis subsp. subtilis str. 168

35.366

100

0.366