Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CIGN_RS04515 Genome accession   NZ_CP018788
Coordinates   909107..909871 (-) Length   254 a.a.
NCBI ID   WP_086302416.1    Uniprot ID   -
Organism   Campylobacter devanensis strain NCTC 13003     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 904107..914871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIGN_RS04485 (CIGN_0902) - 905003..905194 (-) 192 WP_086224401.1 hypothetical protein -
  CIGN_RS04490 (CIGN_0903) - 905187..906476 (-) 1290 WP_086302406.1 endonuclease/exonuclease/phosphatase family protein -
  CIGN_RS04495 (CIGN_0904) - 906464..906952 (-) 489 WP_086224397.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CIGN_RS04500 (CIGN_0905) purU 906952..907782 (-) 831 WP_086302408.1 formyltetrahydrofolate deformylase -
  CIGN_RS04505 (CIGN_0906) - 907876..908742 (-) 867 WP_086302410.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CIGN_RS04510 (CIGN_0907) ruvX 908739..909110 (-) 372 WP_086302412.1 Holliday junction resolvase RuvX -
  CIGN_RS04515 (CIGN_0908) dprA 909107..909871 (-) 765 WP_086302416.1 DNA-processing protein DprA Machinery gene
  CIGN_RS04520 (CIGN_0909) - 909855..911000 (-) 1146 WP_086302479.1 divergent polysaccharide deacetylase family protein -
  CIGN_RS04525 (CIGN_0910) ilvC 911001..912023 (-) 1023 WP_086302482.1 ketol-acid reductoisomerase -
  CIGN_RS04530 (CIGN_0911) - 912165..912977 (+) 813 WP_086228109.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28053.25 Da        Isoelectric Point: 8.1981

>NTDB_id=210220 CIGN_RS04515 WP_086302416.1 909107..909871(-) (dprA) [Campylobacter devanensis strain NCTC 13003]
MNFITELRLNKNFKNSPDKLYYKGDLTLLDRPKVAIVGSRKCSSYTKNMTLNLASTLKKYGVCVVSGAAIGVDIHAHTGA
YPHTIAVFGNGLDQIYPLQNAKMIKDIYQNSLALSSYEPGIVAKGWQFLERNLITVALSDAVVVAQADIKSGSMSSAKAA
IKFGIPLYVLPQRLGESSGTNELLASGKAQIITDFDKFAMKFGLKNYDQNSDEIIEFIKQNSNFDECYSKFGDIIYDYEL
DGKIAIDGIYVRIL

Nucleotide


Download         Length: 765 bp        

>NTDB_id=210220 CIGN_RS04515 WP_086302416.1 909107..909871(-) (dprA) [Campylobacter devanensis strain NCTC 13003]
ATGAACTTTATAACTGAATTACGCCTTAATAAAAACTTTAAAAATTCTCCAGATAAATTGTATTATAAGGGAGATTTAAC
TCTTTTAGATCGTCCAAAAGTAGCAATTGTCGGCTCAAGAAAATGCTCATCTTATACCAAAAATATGACCCTAAATCTCG
CTTCAACGCTAAAAAAATATGGAGTTTGTGTAGTTAGCGGTGCGGCAATTGGCGTAGATATCCATGCTCACACTGGTGCG
TATCCGCATACAATTGCGGTTTTTGGCAATGGATTAGATCAAATTTATCCATTACAAAATGCCAAAATGATAAAAGATAT
CTATCAAAACTCATTAGCATTAAGCTCATATGAGCCAGGTATCGTAGCAAAGGGGTGGCAATTTTTGGAGCGAAATTTAA
TCACGGTAGCCCTAAGCGACGCAGTTGTAGTAGCTCAAGCTGATATTAAAAGTGGCTCTATGAGTAGTGCTAAGGCGGCT
ATTAAATTTGGAATTCCGCTCTATGTATTGCCTCAAAGACTTGGTGAGAGTAGTGGGACTAATGAGTTATTAGCAAGTGG
CAAAGCGCAGATTATTACTGATTTTGATAAATTTGCTATGAAATTTGGGCTGAAAAATTATGATCAAAATAGCGATGAGA
TCATTGAATTTATCAAACAAAATTCAAATTTTGATGAGTGTTATTCTAAATTTGGAGATATTATCTATGATTATGAGCTA
GATGGCAAAATCGCTATTGATGGAATTTATGTGAGAATTTTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.128

92.126

0.508
  dprA Helicobacter pylori 26695

48.523

93.307

0.453

Multiple sequence alignment