Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   BTU49_RS14665 Genome accession   NZ_CP018756
Coordinates   3215142..3216200 (-) Length   352 a.a.
NCBI ID   WP_079223036.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain AA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3210142..3221200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTU49_RS14645 - 3211083..3213050 (-) 1968 WP_079223033.1 type IV pilus secretin PilQ family protein -
  BTU49_RS14650 - 3213072..3213578 (-) 507 WP_079225360.1 pilus assembly protein PilP -
  BTU49_RS14655 pilO 3213605..3214261 (-) 657 WP_079223034.1 type 4a pilus biogenesis protein PilO -
  BTU49_RS14660 - 3214258..3215142 (-) 885 WP_079223035.1 PilN domain-containing protein -
  BTU49_RS14665 pilM 3215142..3216200 (-) 1059 WP_079223036.1 pilus assembly protein PilM Machinery gene
  BTU49_RS14670 - 3216420..3218840 (+) 2421 WP_079223037.1 penicillin-binding protein 1A -
  BTU49_RS14675 - 3219070..3219732 (+) 663 WP_079223038.1 hypothetical protein -
  BTU49_RS14680 - 3219887..3220936 (-) 1050 WP_079223039.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37663.27 Da        Isoelectric Point: 4.4006

>NTDB_id=209962 BTU49_RS14665 WP_079223036.1 3215142..3216200(-) (pilM) [Stenotrophomonas maltophilia strain AA1]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPADLDEADMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAFALVASELPVSHDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVPTVVANPLA
QMTLGPKVQAQALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=209962 BTU49_RS14665 WP_079223036.1 3215142..3216200(-) (pilM) [Stenotrophomonas maltophilia strain AA1]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTGTTGCAGCTTTC
CCGCAGTGGCAACCGTTTCCGCGTGGAACACTACGCCGTGGAACCGTTGCCGCCGAATGCTGTGGTTGAAAAGAACATCG
TCGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGGGCGATGAACCGTTCTGGAAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTCGACGAAGCCGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCTGCCTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTGGGC
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTGGCCAGCGAGCTGCCGGT
GTCCCATGACGGCGTGGTCGCCCTGGTCGACATCGGCGCGACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAAGTGGAAGTGCTGGAACCCTTCAAGGAGGCGACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGTGAATTCAACCGTGTCGACCACATCGTGCTGGCGGGCG
GTTGCGCCGCGCTGGCCGGTCTGCCGGAAATGGTCGAAGAGCAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGCAGGCGCAGGCGCTTGCCCAGGATGCCCCCGCGCTGATGATCGCTACCGGTCTGGC
ACTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.52
  comM Acinetobacter nosocomialis M2

51.989

100

0.52
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment