Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CRT55_RS07235 Genome accession   NZ_CP024056
Coordinates   1183449..1184186 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SMN197SH3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1178449..1189186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT55_RS07200 (CRT55_07160) yfiL 1178606..1178971 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CRT55_RS07205 (CRT55_07165) aroF 1179181..1180251 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CRT55_RS07210 (CRT55_07170) tyrA 1180262..1181383 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CRT55_RS07215 (CRT55_07175) pheA 1181426..1182586 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  CRT55_RS07220 pheL 1182686..1182733 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CRT55_RS07225 (CRT55_07180) raiA 1182837..1183178 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CRT55_RS07235 (CRT55_07190) comL 1183449..1184186 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CRT55_RS07240 (CRT55_07195) rluD 1184321..1185301 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CRT55_RS07245 (CRT55_07200) yfiH 1185298..1186029 (+) 732 WP_062882642.1 purine nucleoside phosphorylase YfiH -
  CRT55_RS07250 (CRT55_07205) clpC 1186159..1188732 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=209906 CRT55_RS07235 WP_000197686.1 1183449..1184186(-) (comL) [Escherichia coli strain SMN197SH3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=209906 CRT55_RS07235 WP_000197686.1 1183449..1184186(-) (comL) [Escherichia coli strain SMN197SH3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376